Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_E20
(1189 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 39 0.001
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.011
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.078
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.31
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 6.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.1 bits (87), Expect = 0.001
Identities = 35/159 (22%), Positives = 51/159 (32%)
Frame = +2
Query: 644 ASXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPXXXXXPXVPLAXPSPQSXXCSSXS 823
+S P PP P + P I+++ + P P + P P +
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Query: 824 PPLXXYPTSXQXXXPXXPXPXPKXLLXXTXSLP*X*XXSXPAQPPLXXPXXPXXPPXXYS 1003
PP+ +S P P P P+ + LP + P PP P PP S
Sbjct: 325 PPIGN-GSSNSSLPP--PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
Query: 1004 GXXPPPXXXPXHLLQXSSDDXPXXXGXXLXXAQPPLPTP 1120
P + S G + PP+PTP
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Score = 35.5 bits (78), Expect = 0.015
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +2
Query: 638 PXASXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPXXXXXPXVPLAXP-SPQSXXCS 814
P S P PP PP+ T P P+ PP P +P+ P +P +
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP--SAPPSLPMGAPAAPPLPPSA 453
Query: 815 SXSPPLXXYPTSXQXXXPXXPXPXP 889
+PPL + P P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 31.1 bits (67), Expect = 0.31
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = +2
Query: 647 SXPPXPPXPAYXHXL*PPIHTSXRRPXPXX-PAXPPXXXXXPXVPLAXPSPQSXXCSSXS 823
S PP P P+ P + S P PA PP P P+A P P +
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP---PSAPIAPPLPAGMPAAPPL 469
Query: 824 PPLXXYPTSXQXXXPXXP 877
PP P P P
Sbjct: 470 PPAAPAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.7
Identities = 31/153 (20%), Positives = 49/153 (32%)
Frame = +2
Query: 728 PXXPAXPPXXXXXPXVPLAXPSPQSXXCSSXSPPLXXYPTSXQXXXPXXPXPXPKXLLXX 907
P + PP P +P + P + S+ +PP P++ P P P +
Sbjct: 224 PTSTSAPPIP---PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSM 280
Query: 908 TXSLP*X*XXSXPAQPPLXXPXXPXXPPXXYSGXXPPPXXXPXHLLQXSSDDXPXXXGXX 1087
++ + ++PPL P + PP P + + P G
Sbjct: 281 NPAI------NSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPS--RRNRGKPPIGNGSS 332
Query: 1088 LXXAQPPLPTPSXXRXLPQXXLWTXQSXTPPPP 1186
PP P P +S PPPP
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.2 bits (55), Expect = 8.9
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +2
Query: 629 LPXPXASXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPXXXXXPXVPLA 784
LP + PP PP L + + P P PA PP P P+A
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP-PAAPAPPPAPAPAPAAPVA 489
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.011
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Frame = +2
Query: 644 ASXPPXPPXPAYXHXL*PPIHTSXRR--PXPXXPAXPPXXXXXPXVPLAXPSPQSXXCSS 817
A+ P P P L PP R P P + PP P +P + P P
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 818 XSPP-LXXYPTSXQXXXPXXPXP 883
SPP P++ P P P
Sbjct: 182 KSPPSAPSLPSAVPPMPPKVPPP 204
Score = 27.5 bits (58), Expect = 3.9
Identities = 25/86 (29%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Frame = +2
Query: 767 PXVPLAXPSPQSXXCSSXSPPLXXYPT-SXQXXXPXXPXPXPKXLLXXTXSLP*X*XXSX 943
P P A P+PQS PP P S P P P SLP +
Sbjct: 125 PSAP-APPTPQS----ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 944 PAQPPLXXPXXPXXPPXXYSGXXPPP 1021
P + P P P P PPP
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.078
Identities = 42/172 (24%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Frame = +2
Query: 647 SXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPXXXXXPXVPLAXPSPQSXXCSSXSP 826
S PP P+ L P+ TS P P P P VPL S +P
Sbjct: 984 SEPPKDHPPSAP--LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 827 PLXXYPTS------XQXXXPXXPXPXPKXLLXXTXSLP*X*XXSXPAQPPLXXPXXPXXP 988
P+ PTS P P P P S+P + PP+ P P
Sbjct: 1042 PV-PIPTSTPPVPKSSSGAPSAPPPVPAP-SSEIPSIP-----APSGAPPV--PAPSGIP 1092
Query: 989 PXXYSGXXPPPXXXPXHLLQXSSDDXPXXXGXXLXXAQPPLPTPSXXRXLPQ 1144
P PP P + A PP+P PS +P+
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
Score = 30.7 bits (66), Expect = 0.41
Identities = 40/163 (24%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Frame = +2
Query: 407 PLDCSTVGIMPX*PSXGPDPXPXXPSASPAXXXP---PXVRXXXXXATX*PALRLXXXXX 577
P+ +V + P G P P A+P P P V A PA
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 578 SPLKXXXHRYAXTRGXX-LPXPXASXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPX 754
P A + G +P P A PP PP P + P P P
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Query: 755 XXXXPXVPL----AXPSP-QSXXCSSXSPPLXXYPTSXQXXXP 868
P VP+ A P P S S S P P+ P
Sbjct: 1223 SAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASP 1265
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.31
Identities = 43/198 (21%), Positives = 64/198 (32%), Gaps = 11/198 (5%)
Frame = +2
Query: 629 LPXPXASXPPXPPXPAYXHX----L*PPIHTSXRRPX-PXXPAXP--PXXXXXPXVP--L 781
+P P A+ P P P+ + P + ++ +RP P P P P P VP L
Sbjct: 514 VPQPPAA-PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEAL 572
Query: 782 AXPSPQSXXCSSXSPPLXXYPTSXQXXX-PXXPXPXPKXLLXXTXSLP*X*XXSXPAQPP 958
+ P P + P + P + P P P + S+P PA P
Sbjct: 573 SVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP-----QRPAVPV 627
Query: 959 LXX-PXXPXXPPXXYSGXXPPPXXXPXHLLQXSSDDXPXXXGXXLXXAQPPLPTPSXXRX 1135
+ P P P P P + + P + P +P P
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPV 687
Query: 1136 LPQXXLWTXQSXTPPPPH 1189
+P+ P PPH
Sbjct: 688 VPEAGQLNEPVVPPLPPH 705
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/69 (27%), Positives = 22/69 (31%)
Frame = +2
Query: 620 GXXLPXPXASXPPXPPXPAYXHXL*PPIHTSXRRPXPXXPAXPPXXXXXPXVPLAXPSPQ 799
G P S PP P A + P P P+ PP P P P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP-PPPLPA 1737
Query: 800 SXXCSSXSP 826
S S +P
Sbjct: 1738 SSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +2
Query: 875 PXPXPKXLLXXTXSLP*X*XXSXPAQPPLXXPXXPXXPPXXYSGXXPPPXXXP 1033
P P P ++ T P P P+ P PP +G PPP P
Sbjct: 732 PPPPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,049
Number of Sequences: 5004
Number of extensions: 22649
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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