Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E17
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    30   0.38 
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   8.1  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   8.1  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +3

Query: 114 SACPR-CGKSRMYFCYVCFIPVPA---LEGKIPYCKLPIKV 224
           S+C + CGK RMY  +VC  P  A    + +IP CK P++V
Sbjct: 725 SSCKKECGKRRMYCEHVCQSPCHAGHPCDERIP-CKAPLEV 764


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = -2

Query: 734 TNVILTQVDVMIQLW--------KDTT*DCXXVSPKLRWSVLQNYGWQFLNSFIGIYTTA 579
           T+++LT  ++M+Q++        KD   +   +S KL W VL   G+Q  ++ + + + A
Sbjct: 9   TSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSGA 68

Query: 578 LIPGAVN 558
            I   +N
Sbjct: 69  WITFLLN 75


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 402 NQQQNQPSYSEIMLSQLPVGYNVGTLMKKIVTR---KDNH--EIYHVQELPINH 548
           N + N   Y+EI      VGY  G+ +K++++    KDN   +I  + +L  NH
Sbjct: 115 NLEHNVKQYAEIASKISAVGYLWGSNIKEVMSNAGFKDNEVFDILLLSDLVFNH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,523,761
Number of Sequences: 5004
Number of extensions: 73505
Number of successful extensions: 207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)