Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E17
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    30   2.8  
06_01_0867 - 6600847-6601413,6601954-6602181                           30   2.8  
02_05_0734 + 31318380-31318610,31319422-31319988                       28   8.6  
01_01_0795 - 6187518-6188219                                           28   8.6  

>06_03_1318 -
           29282562-29282566,29282727-29282810,29282913-29283380,
           29283735-29283917,29284362-29284467,29284627-29284651,
           29284736-29284855,29284920-29284997,29285646-29285774,
           29285976-29285989,29286168-29287944,29288344-29288489,
           29288921-29291029
          Length = 1747

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 340 LMERLFCCFLELRQNLCETYSINNKISLHTQKLCYHN 450
           L E L CCFL++R+   E   +N     +  K CY N
Sbjct: 874 LTEELICCFLDMRRQYLE---LNGLSYCYAMKGCYQN 907


>06_01_0867 - 6600847-6601413,6601954-6602181
          Length = 264

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +1

Query: 166 LFQYQHLKEKYLTVNYQ*KWILSNTKERLMVKALQPMLLFLLHGMSQCTHIQIFQIILLM 345
           L+++ H K   L V Y    + ++  E L++  +   L FL+ GM+  T I  F    + 
Sbjct: 122 LYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTIGGALSFLIAGMTPKTAIFFFSFATIK 181

Query: 346 ERLFCCFLELRQNLCETYSINN 411
                C L L  N+   +  NN
Sbjct: 182 TVDDHCGLWLPGNILHVFFSNN 203


>02_05_0734 + 31318380-31318610,31319422-31319988
          Length = 265

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +1

Query: 169 FQYQHLKEKY--LTVNYQ*KWILSNTKERLMVKALQPMLLFLLHGMSQCTHIQIFQIILL 342
           F Y+H+  K+  L V Y    + ++  E L++  +   L FL+ GM+  T I  F    +
Sbjct: 122 FLYKHIHSKHHTLVVPYSFGALYNHPLEGLILDTIGGALSFLVSGMTPRTSIFFFSFATI 181

Query: 343 MERLFCCFLELRQNLCETYSINN 411
                 C L L  N+      NN
Sbjct: 182 KTVDDHCGLWLPGNILHALFNNN 204


>01_01_0795 - 6187518-6188219
          Length = 233

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +3

Query: 102 LSSRSACPRC-GKS----RMYFCYVCFIPV-PALEGKIPYCKLPIKVDIIKHKGEINGKS 263
           LSSR++CP C GK+     +    V  I V P L G  P   + + V +   KGE+ G S
Sbjct: 149 LSSRASCPVCRGKAAPADELADAIVARIAVTPDLVG--PRVSMSVVVPVEMLKGEMVGAS 206

Query: 264 TAAHAAVLAPRDV 302
           + + AA   P  +
Sbjct: 207 STSRAASAPPEQL 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,839,633
Number of Sequences: 37544
Number of extensions: 442132
Number of successful extensions: 1000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)