Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E16
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   4.7  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    27   4.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   6.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.2  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    26   8.2  

>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 552 TRQTLPGLNPARSYAPIGRATWSP 623
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 331 LVGSAAASNRHLSTLCRLPHVVFGG 257
           +VG + AS    STLC+L H +F G
Sbjct: 7   IVGVSGASCSGKSTLCQLLHAIFEG 31


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 306 LDAAALPTKLLCEGRRSLPHSWPLLLQRSARSWSAALLCASRSTCT 443
           LD+++   + +    R    SW  LLQ  AR+W   L  AS+++ T
Sbjct: 158 LDSSSTVIQRILPAIREHGISWSWLLQLIARTWMNTLKIASQASKT 203


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 287  QCAQVAIGCSRAAHQTALRGSTKPSPQ-LATLTPKVRAFVERSAA 418
            Q A   I C  +A+ T  +  T      L T  P+VRAF+E S A
Sbjct: 1848 QAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRAFIEFSLA 1892


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 648 ADFWPARAEGTTSLSRSEHMNVRDSTRATSAGSVRANQQLSYWG 517
           A F P  A+    L + E  NV  S   T  G     +QLSYWG
Sbjct: 48  ATFTPDLAKRLAVLVKMEK-NVMRSMEVTIRGRRDCARQLSYWG 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,453
Number of Sequences: 5004
Number of extensions: 60788
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)