Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E10
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.045
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.73 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -2

Query: 581 GXPPPXPXPPXRGGGGXFFXXKXPPPPPP 495
           G PPP P PP   G G       PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAG----PPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 21/59 (35%), Positives = 21/59 (35%)
 Frame = +3

Query: 426 PPPPXXXXXNPPPXPSXXFXXXXGGGGGXXFXXKKXPPPPPXGGXGXWGGXPXXPPXXP 602
           PPPP      P P P          GG         PPPPP G  G   G P  PP  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG-------PPPPPPPPGVAG--AGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = +3

Query: 720 PXXXPXPXXGPXXGGVXXXPPPPPPXNXKKXXPXXGGGGXPP 845
           P   P P   P  GG    PPPPPP       P   G G PP
Sbjct: 746 PAPIPVPPPAPIMGG----PPPPPP------PPGVAGAGPPP 777



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -2

Query: 587 GXGXPPPXPXPPXRGGGGXFFXXKXPPPPP 498
           G G PPP P PP    GG  +    P   P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 732 PXPXXGPXXGGVXXXPPPPPP 794
           P P   P   G    PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 581 PXPPPXPXXXPXXXXGGGGGXXPPGGXXXXPPP 679
           P P P P   P    GG     PP G     PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 590 GGXGXPPPXPXPPXRGGGGXFFXXKXPPPPPP 495
           G    PPP P P    GG  ++       P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = -2

Query: 581 GXPPPXPXPPXRGGGGXFFXXKXPPPPPPXGXXK 480
           G PPP P PP       F     PPPPPP G  K
Sbjct: 7   GNPPPPPPPPG------FEPPSQPPPPPPPGYVK 34



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 720 PXXXPXPXXGPXXGGVXXXPPPPPPXNXKK 809
           P   P P   P        PPPPPP   KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 690 PPPXGGGXXXXPPGGXXPPPPP 625
           PPP        PP    PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 25/86 (29%), Positives = 25/86 (29%)
 Frame = -3

Query: 793 GGGGGGXXXTPPXXGPXXGXGXXXGXXXXXXXXXPXPXGGGXXXXPXGGXPXPPPPXXXX 614
           GG GGG    PP  G   G G   G             G G      GG    P      
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP------ 244

Query: 613 RXXXGXXGGXXGXPPQXPXPPXGGGG 536
               G  GG  G P      P G GG
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 21/65 (32%), Positives = 22/65 (33%)
 Frame = +3

Query: 498 GGGGXXFXXKKXPPPPPXGGXGXWGGXPXXPPXXPXXXRXXXXGGGGXGXPPXGXXXXPP 677
           GGG   F      PPP  GG G +GG                 G GG G  P G    P 
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGF--------GGEGHHHGGHGGFGGGPGGFEGGPG 238

Query: 678 PXGXG 692
             G G
Sbjct: 239 GFGGG 243



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/44 (36%), Positives = 16/44 (36%)
 Frame = -2

Query: 545 GGGGXFFXXKXPPPPPPXGXXKXXGRXGGGVXXXXXGGGGAKXG 414
           GG G F      PPP P G     G  G G      GG G   G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
 Frame = -1

Query: 765 PPPXXXXXXGPXXGXXXXXXXXXXXPPPX---GGGXXXXPPGGXXPPPPP 625
           PPP       P  G           PPP      G    PP G   PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 29/132 (21%), Positives = 29/132 (21%), Gaps = 5/132 (3%)
 Frame = +3

Query: 525 KKXPPPPP-----XGGXGXWGGXPXXPPXXPXXXRXXXXGGGGXGXPPXGXXXXPPPXGX 689
           KK PPPPP       G    G         P          G    PP G    PPP   
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 690 GXXXXXXXXXPXXXPXPXXGPXXGGVXXXPPPPPPXNXKKXXPXXGGGGXPPGXXXXXXX 869
                     P         P        PPP  P       P  G              
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNP------PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 870 XXXPXXXPXXPP 905
              P   P  PP
Sbjct: 422 SLPPSAPPSLPP 433



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
 Frame = -3

Query: 643 PXPPPPXXXXRXXX--GXXGGXXGXPPQXPXPPXGGGGGXFF--XXXNXPPPPP 494
           P PPPP    R     G        PP  P P     G         + PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 27/122 (22%), Positives = 28/122 (22%)
 Frame = +3

Query: 426 PPPPXXXXXNPPPXPSXXFXXXXGGGGGXXFXXKKXPPPPPXGGXGXWGGXPXXPPXXPX 605
           P PP      PPP P                     PP PP    G     P  PP    
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR--SAPALPPLGNA 409

Query: 606 XXRXXXXGGGGXGXPPXGXXXXPPPXGXGXXXXXXXXXPXXXPXPXXGPXXGGVXXXPPP 785
                         PP      PP              P     P   P   G+   PP 
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL 469

Query: 786 PP 791
           PP
Sbjct: 470 PP 471



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 572 PPXPXPPXRGGGGXFFXXKXPPPPPPXGXXKXXGR 468
           PP P P  R         K  PPPPP    +  G+
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = -2

Query: 575 PPPXPXPPXRGGGGXFFXXKX---PPPPPP 495
           PPP P P     G      +    PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +3

Query: 456 PPPXPSXXFXXXXGGGGGXXFXXKKXPPPPPXGGXGXWGGXPXXP 590
           PPP PS         G G        PPPPP       G  P  P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA--GSIPLPP 355


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 759 GGVXXXPPPPPPXN 800
           GG+   PPPPPP N
Sbjct: 303 GGLPPPPPPPPPSN 316


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 832 PPPXXGXXFXXFXGGGGGGXXXTPPXXGPXXGXGXXXG 719
           PPP  G  F    GGG  G     P  GP  G G   G
Sbjct: 99  PPPPRGPLFGPRIGGGHHG-----PLHGPHGGFGGRGG 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,607
Number of Sequences: 5004
Number of extensions: 45675
Number of successful extensions: 272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)