Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E08
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...   151   1e-37
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    54   4e-08
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    29   0.86 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   1.1  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.6  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    27   3.5  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   6.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   8.1  

>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score =  151 bits (366), Expect = 1e-37
 Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 12/201 (5%)
 Frame = +3

Query: 153 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 332
           MPKS+R K ++L +T KKG   K  +   ++ SL  ++++++F + NMRNT LK +R+DW
Sbjct: 1   MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60

Query: 333 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 512
           K SR F GK KVMA ALG T  +E  E ++ L+K L G  GLL TN    +V+ +F+S+ 
Sbjct: 61  KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120

Query: 513 ASEYARAGFIATKDVLLPKGPLAD------------FSHTIEPHLRRLGLPTSLEKGVIN 656
            +++ARAG +A    ++P GP+               +HT+EP +R+LG+PT L+ GV+ 
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180

Query: 657 LIKEYQGLQERCSTDPRNKQV 719
           L+ ++    E    D R  ++
Sbjct: 181 LLADFPLCTEGQQLDSRQTRL 201



 Score = 29.5 bits (63), Expect = 0.65
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 707 KQASILKLIGIEMADFKLVIKCHWT-KGKGIHIDNDAPSDEEXAE 838
           +Q  +LKL GI  A+FK+ +  +++ KG  +     AP  +E  E
Sbjct: 197 RQTRLLKLFGITAAEFKVGLLGYYSKKGASVEFLQSAPGADEAME 241


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 1/163 (0%)
 Frame = +3

Query: 219 KQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDS-RFFFGKNKVMAIALGKTK 395
           K +  E++R+   KY  +F+  I+N+ + ++  +R   + +     GKN ++  A+    
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 396 SDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGP 575
           +D  E  L  L   ++G  G + TN D+ +V     +   +  AR   IA  DV +P G 
Sbjct: 68  NDMPE--LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGN 125

Query: 576 LADFSHTIEPHLRRLGLPTSLEKGVINLIKEYQGLQERCSTDP 704
                       + LG+PT + +G I +  +   + +     P
Sbjct: 126 TG-MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGP 167


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 427 NRFSCSSISSLLV-LPRAIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLS 251
           N F+ S+ S  LV L   ++I+L F +   E++Q  R + +F      +V   +C Y L 
Sbjct: 13  NIFTHSAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLK 72

Query: 250 EFLISSMTFCLCTKPFLLVFVSDTFLSLFDF 158
           E         L   PF+ V   D F  + DF
Sbjct: 73  EKYKEQAQAKLSNIPFVFVRPRDEFPEMDDF 103


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 358 FPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFVSDT 179
           FP+  L S ++ R++    F      + +  S+  SE L++++   +C K F  V     
Sbjct: 684 FPR--LASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKRFNSVVSISR 741

Query: 178 FLSLFDFGI 152
           F S+FD G+
Sbjct: 742 FSSIFDLGL 750


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 445 PFNFFDNRFSCSSISSL--LVLPRAIAITLFFPKKNLESFQSFRRSF 311
           P N+FDN ++ +SISS   ++LP  I+   F P   L      R+SF
Sbjct: 604 PANYFDNVYTPNSISSFSEVLLPNLISTLNFAP---LSLIPLLRKSF 647


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 478 TSLFVISNPH*PFNFFDNRFSCSSISSL-LVLPRAIAITLF 359
           TSL +I+  + P NF D+R  C ++S++ L L       LF
Sbjct: 9   TSLVIIAFRYLPNNFNDSRLGCDNLSTVGLCLKNGTGEVLF 49


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 456 LLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIEPH 608
           +L+    VPD++NW ++  A  +   G  A    L+ +  L   S   EP+
Sbjct: 345 VLLFKSFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPN 395


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 477 VPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIE 602
           + + L   +SY   +Y+R+  + T    LP+  +  F+++IE
Sbjct: 30  ISNYLKPVRSYPYIKYSRSSLLLTASTTLPENFVISFTNSIE 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,739
Number of Sequences: 5004
Number of extensions: 72916
Number of successful extensions: 243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)