Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E07
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L35013-1|AAA60300.1|  424|Homo sapiens spliceosomal protein prot...    31   4.2  
BC090883-1|AAH90883.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  
BC013886-1|AAH13886.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  
BC004273-1|AAH04273.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  
AL591493-2|CAI12554.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  
AL590487-2|CAI12648.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  
AK223322-1|BAD97042.1|  424|Homo sapiens splicing factor 3b, sub...    31   4.2  

>L35013-1|AAA60300.1|  424|Homo sapiens spliceosomal protein
           protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>BC090883-1|AAH90883.1|  424|Homo sapiens splicing factor 3b,
           subunit 4, 49kDa protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>BC013886-1|AAH13886.1|  424|Homo sapiens splicing factor 3b,
           subunit 4, 49kDa protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>BC004273-1|AAH04273.1|  424|Homo sapiens splicing factor 3b,
           subunit 4, 49kDa protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>AL591493-2|CAI12554.1|  424|Homo sapiens splicing factor 3b,
           subunit 4, 49kDa protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>AL590487-2|CAI12648.1|  424|Homo sapiens splicing factor 3b,
           subunit 4, 49kDa protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


>AK223322-1|BAD97042.1|  424|Homo sapiens splicing factor 3b,
           subunit 4 variant protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 567 PGXPPXLGXTXXPPLXXGKPXPXXGXPGAGXQXXGXRXXXP 445
           PG PP +     PP   G   P  G PGAG    G     P
Sbjct: 255 PGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHP 295


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,766,200
Number of Sequences: 237096
Number of extensions: 1430896
Number of successful extensions: 11773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6534
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)