Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E06
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   2.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   8.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 429 PRRRHMKISARNRVG 473
           PR  H+K+S  NRVG
Sbjct: 385 PRSTHLKVSGINRVG 399


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 KGIVKVGALDADEHRSVSQKYGVT 330
           KGI+K   L+  EHRS S K G+T
Sbjct: 587 KGIMKTYWLEKREHRSSSTK-GIT 609


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 135 CQLDNVLKTNRRGPRT 88
           CQ DN    +RRG RT
Sbjct: 100 CQADNQYAVDRRGFRT 115


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 227 TRLLQCPHHGAKNSMIQ 177
           +RL++C HH  +N+ I+
Sbjct: 145 SRLMRCLHHDIENAHIR 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,461
Number of Sequences: 438
Number of extensions: 5600
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)