Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E05
         (959 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.58 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +1

Query: 808 PPPXXKPXKXPXPPXXXGPPPPGXXXXXXXXPPXXXPPXXPXXXXP 945
           P P   P + P  P    PP P         PP   PP  P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQG------PPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +3

Query: 669 PXGGGXXPPPPRXXXPPKXXFFXXXRPXXXPPPXGXXG 782
           P  G   P P     P          P   PPP G  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 536  PPPPPPP 516
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 536  PPPPPPP 516
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 902 PPXXXPPXPPP 934
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,267
Number of Sequences: 438
Number of extensions: 9698
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)