Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E04
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = -2

Query: 850 GGKXXXPPXSGGEGXXFFFFXGGXXXGGXGGFFXGGXPXFFXXXGG 713
           GG    PP  GG G    F   G   GG GGF  GG P  F    G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF--GGGPGGFEGGPG 238



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = -3

Query: 537 GGXKXPPPPPXXGGGXFXG-GGXGXXXKKXPXXXGGGGXF 421
           GG    PPP   G G F G GG G          GG G F
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +1

Query: 430 PPPXXXGXFFXXPXXPPPXKXPPPPXXGGGGXFXPP 537
           PPP   G     P  PPP   PPP    GG  +  P
Sbjct: 763 PPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +2

Query: 422 KXPPPPXXXGXFFXXXPXPPPKKXPPPXXGGGGGXXXPPXGG 547
           K PPPP          P P P   PPP    GG    PP  G
Sbjct: 730 KSPPPPPPA--VIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 430 PPPXXXGXFFXXPXXPPPXKXPPPPXXGGGGXFXPPXG 543
           PPP         P   P    PP P  GG     PP G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 466  PXXPPPXKXPPPPXXGGGGXFXPP 537
            P  PPP   PPP     GG F  P
Sbjct: 942  PAFPPPPPPPPPLVSAAGGKFVSP 965


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 708 GXPPXNXKXXGXPPXKNPPXPPFXXPPXKKKKXXPSPPEXG 830
           G PP      G  P   PP PP   P   KK+   +P + G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP--PPGYVKKRKNKTPAQSG 45



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
 Frame = +3

Query: 714 PPXNXKXXGXPPXKNPP-XPPFXXPPXKKKKXXPSPPEXGG 833
           PP N      PP   PP  PP   PP   KK     P   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 430 PPPXXXGXFFXXPXXPPPXKXPPPP 504
           PPP      F  P  PPP   PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP---PPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
 Frame = +2

Query: 398 GGGXXXXKKXPPPPXXXGXFFXXXPXPPPKK----XPPPXXGGGGGXXXPP 538
           G G       PPPP          P PP  +     PPP      G   PP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 714 PPXNXKXXGXPPXKNPPXPPFXXPPXKKKKXXPSPP 821
           PP +       P K PP P    PP +      SPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,657
Number of Sequences: 5004
Number of extensions: 23894
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)