Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E03
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    67   3e-12
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.6  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 34/62 (54%), Positives = 42/62 (67%)
 Frame = +3

Query: 378 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRVAPRIWLS 557
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRVAPR  L+
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRVAPRSGLA 66

Query: 558 SE 563
           S+
Sbjct: 67  SK 68



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = +1

Query: 547 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDF 654
           SGLA K+ ID GAGVID DYRG+V V+LFN+SD DF
Sbjct: 63  SGLASKHSIDTGAGVIDADYRGHVRVLLFNYSDVDF 98



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 659 VKKGDRIAQLICEKIYYPVLQEVANLSVTQR 751
           +K GDRIAQLI E+I  P +  V +L  T R
Sbjct: 100 IKVGDRIAQLILERIVNPPVILVESLEATVR 130


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 777 PVEPNPPSPL*VTDKLATSCNTG 709
           PVEP+PPSP  +   + TS +TG
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTG 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,556
Number of Sequences: 5004
Number of extensions: 54517
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)