Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D24
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   5.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.8  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 447 HVLLCSMMR*WF*TAPVQLCPIFVTLLSCH 358
           H ++   M        +Q+CPI++   S H
Sbjct: 111 HAIIACQMEFQLYPMDIQICPIYIESFSYH 140


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 480 DSFSNVKQWLEEIDRYACDN 539
           +++  VK+W + +D YA +N
Sbjct: 270 ETYELVKEWRDFVDNYAEEN 289


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 306 SRCKYHQRILATDMISQLQSHQSGV 232
           S C+    I +TD+I   Q H  GV
Sbjct: 520 SACRPRHEIRSTDVIPGTQEHVCGV 544


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 767 RSGDNPSTPASPVLLNTACLLTXVRX*REGXRQTRTVXG 883
           R G+NP T   P +L+   ++      REG   T    G
Sbjct: 368 RPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATTG 406


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 639  VPRDVSEELYE 671
            VPRDVSE +Y+
Sbjct: 1265 VPRDVSEGIYD 1275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,628
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)