Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D23
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 842 VIVLIFNCCLPFALKRRVSFPEPKFCFFPDL 750
           V++L F C  PF  +R +     +  ++PDL
Sbjct: 275 VVILFFICWAPFHTQRLLYVYAQESDYYPDL 305


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 FSPEDILFCTLNTHKVDMKKLL 401
           F P  +    LN H  DM+KL+
Sbjct: 634 FKPPTLTESLLNRHNEDMEKLM 655


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 517 APLSVIVNPRASSVLTISISFGRPFL 440
           +P+SV V+P A+SV+  +++   P L
Sbjct: 458 SPMSVQVDPMAASVVAAALTGTYPTL 483


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 648 LPPHNVFSQPYSHHSISQYDLRPQY 574
           +PP +  + P  H  ++ Y L+P Y
Sbjct: 391 VPPISGSATPVFHQEMALYYLKPSY 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,828
Number of Sequences: 438
Number of extensions: 4891
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)