Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D21
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...   116   2e-26
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15...    29   3.7  
09_06_0289 - 22053561-22055666,22055745-22055771                       29   4.9  
03_03_0163 - 14971398-14971562,14971638-14971664                       29   4.9  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    28   8.6  
02_02_0377 + 9554685-9554915                                           28   8.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score =  116 bits (279), Expect = 2e-26
 Identities = 51/88 (57%), Positives = 70/88 (79%)
 Frame = +2

Query: 152 CTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSK 331
           C+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+  + LPKLYAK+H+CVSCAIH+ 
Sbjct: 23  CSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAH 82

Query: 332 VVRNRSKKDRRIRTPPKSNFPRDMSRPQ 415
           +VR RS+++RR R PP+  F R +  P+
Sbjct: 83  IVRVRSRENRRDRRPPE-RFRRRVPDPR 109



 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +1

Query: 85  MTRKRRNGGRAKHGRGHVKAVR 150
           MT KRRNGGR KHGRGHVK +R
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIR 22


>07_01_0023 -
           154119-154541,154697-154741,154875-154922,156104-156185,
           156365-156444,156606-156677,156827-156921,157479-157515
          Length = 293

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 67  GSEVRNMTRKRRNGGRAKHGRGHVKAVRMHKLRAVRAKRQGYQKVRD*EHRRSGGGQRY* 246
           G E + M   ++ GG A+ GRG ++    H  ++  A   G+ +     H+     +   
Sbjct: 201 GGEQQMMNSSKKGGGWARGGRGKLQVAAPHSPQSAPAGSVGHFEPASPRHKLPASPRH-- 258

Query: 247 RCLCIPNVPAP 279
           +C   P  P P
Sbjct: 259 KCPSSPRQPPP 269


>09_06_0289 - 22053561-22055666,22055745-22055771
          Length = 710

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 414 RQCKGSDLLLNK*XNXKKKKKKKKXXXKXKK 506
           R CK  +L+  K    KKKKKKKK   K KK
Sbjct: 2   RACK-QNLIKKKKKKKKKKKKKKKKKKKKKK 31


>03_03_0163 - 14971398-14971562,14971638-14971664
          Length = 63

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 462 KKKKKKKKXXXKXKKXKSTAAXD 530
           KKKKKKKK   K KK K  A  D
Sbjct: 20  KKKKKKKKKKKKKKKKKKHACFD 42


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 456 NXKKKKKKKKXXXKXKKXK 512
           N KKKKKKKK   K KK K
Sbjct: 89  NKKKKKKKKKKKKKKKKKK 107


>02_02_0377 + 9554685-9554915
          Length = 76

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 456 NXKKKKKKKKXXXKXKKXK 512
           N KKKKKKKK   K KK K
Sbjct: 21  NAKKKKKKKKKKKKKKKKK 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,957
Number of Sequences: 37544
Number of extensions: 286991
Number of successful extensions: 909
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)