Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D19
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   6.1  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 659 DADDRTHRSMSAPPDTPNQTKMSVHNHQEQTHQPHGXT 772
           +AD R  RS S   +   +      N++E++H PHG T
Sbjct: 405 NADARRFRSGSDVNNVDRKCVKKQMNYREESHTPHGNT 442


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 108 RASKCLFSGIVLYLVVFNL 164
           RA KC+ S + LY ++FN+
Sbjct: 461 RALKCVCSMVTLYFIIFNI 479


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 471 LATNNHNSRRPLRQLNHSN-----KRPPHRLNRLRRTANTSS 581
           L T++ N+R PLR  N SN     K   H +N ++ + + SS
Sbjct: 187 LNTSSFNTRSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,903
Number of Sequences: 5004
Number of extensions: 51210
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)