Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D19
         (872 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040232-1|AAH40232.1|  696|Homo sapiens CCDC88B protein protein.      33   1.0  
BC030194-1|AAH30194.1|  223|Homo sapiens CCDC88B protein protein.      33   1.0  
AK125277-1|BAC86110.1|  468|Homo sapiens protein ( Homo sapiens ...    30   9.5  

>BC040232-1|AAH40232.1|  696|Homo sapiens CCDC88B protein protein.
          Length = 696

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 489 NSRRPLRQLNHSNKRPPHRLNRLRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 662
           + R PLR   ++ + P  R  R R   N    P  H + S+T  T G  V P+R WS+
Sbjct: 529 DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 583


>BC030194-1|AAH30194.1|  223|Homo sapiens CCDC88B protein protein.
          Length = 223

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 489 NSRRPLRQLNHSNKRPPHRLNRLRRTANTSSKPRYHSTDSETQ*T*GRRVPPTRAWSM 662
           + R PLR   ++ + P  R  R R   N    P  H + S+T  T G  V P+R WS+
Sbjct: 56  DGRTPLRPCRNTKQMPTERALRYRNRRNV---PSPHPSASDTVGTAGLGVQPSRHWSV 110


>AK125277-1|BAC86110.1|  468|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43287 fis, clone MESAN2006563. ).
          Length = 468

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 420 LPSSESTFRRTGTAGSALATNNHNSRRPLR----QLNHSNKRPPHRLNRLRR 563
           +PS   T RR  T   A       SRRP R    +L   + R P+RL RLRR
Sbjct: 5   VPSDSRTSRRPTTRPHAARGAPRGSRRPGRTPKWRLPRISARAPYRLRRLRR 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,586,147
Number of Sequences: 237096
Number of extensions: 1931038
Number of successful extensions: 5825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5819
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)