Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D18
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   142   8e-35
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.90 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   4.8  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   8.4  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    26   8.4  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  142 bits (343), Expect = 8e-35
 Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
 Frame = +1

Query: 277 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 453
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 454 STNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCK 633
           ST QA G+NSDT L P A+Y DPFRRG++ILV+   Y  +  P   N+R +C +  +K  
Sbjct: 67  STGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHA 126

Query: 634 DDEPWFGIEQEYILLDSDLRPFRVAPGLVP 723
           D E WFGIEQEY +LD   RPF    G  P
Sbjct: 127 DKETWFGIEQEYTMLDYYDRPFGWPKGGFP 156



 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = +3

Query: 702 GGPRVGSPHRKGHTTAVSVPTKSLPETLXEAHYRCCLYAGVPIAGTNAEVMPSQWEFKVG 881
           G P+ G P  +G         +     + EAHY+ CLYAG+ I+G NAEVMPSQWE++VG
Sbjct: 149 GWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMPSQWEYQVG 208

Query: 882 PSIGV 896
           P  G+
Sbjct: 209 PCAGI 213


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 399 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 295
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 211 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 327
           H KIE+N + +S P ++ S    L    L  +  + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 220 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 399
           ++DN  + S     +S N+ LS +    +  +P+PA  +  T +  D +    R    T 
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351

Query: 400 NFIPKAPKD 426
           +FI  + K+
Sbjct: 352 SFIANSEKE 360


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 451 SSTNQADGHNSDTYLVPRAI 510
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -2

Query: 672 NIFLFYPKPGLIILAFVVS-------FLTTDAIVALCWLHVVFIRITHNEDVISSTEWIL 514
           N  L + KPGL+ +A           F+TT     L   HVVF  +T   DV+   E + 
Sbjct: 85  NFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLG 144

Query: 513 VNS 505
            NS
Sbjct: 145 SNS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,989
Number of Sequences: 5004
Number of extensions: 84216
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)