Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D18
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 136 3e-32
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 135 5e-32
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 127 1e-29
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 111 1e-24
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 31 1.7
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 5.1
01_01_0307 + 2513678-2513772,2514064-2514682 29 5.1
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575... 28 8.8
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 28 8.8
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 136 bits (328), Expect = 3e-32
Identities = 69/148 (46%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Frame = +1
Query: 253 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 432
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 433 IWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQ 612
WN+DGSST QA G +S+ L P+AI+KDPFR GN+ILVMCDTY EP +N R
Sbjct: 851 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAA 910
Query: 613 EAYD--KCKDDEPWFGIEQEYILLDSDL 690
+ + K PWFGIEQEY LL D+
Sbjct: 911 QVFSDPKVVSQVPWFGIEQEYTLLQRDV 938
Score = 72.9 bits (171), Expect = 3e-13
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +3
Query: 702 GGPRVGSPHRKGHTTAVSVPTKSLPETLXEAHYRCCLYAGVPIAGTNAEVMPSQWEFKVG 881
G P G P +G KS + +AHY+ CLYAG+ I+GTN EVMP QWE++VG
Sbjct: 943 GWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVG 1002
Query: 882 PSIGVXA 902
PS+G+ A
Sbjct: 1003 PSVGIEA 1009
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 135 bits (326), Expect = 5e-32
Identities = 64/123 (52%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Frame = +1
Query: 328 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 507
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 508 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 681
I+KDPFR+GN+ILVMCD Y EP +N R + + + + +EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 682 SDL 690
D+
Sbjct: 137 KDI 139
Score = 69.3 bits (162), Expect = 4e-12
Identities = 31/67 (46%), Positives = 41/67 (61%)
Frame = +3
Query: 702 GGPRVGSPHRKGHTTAVSVPTKSLPETLXEAHYRCCLYAGVPIAGTNAEVMPSQWEFKVG 881
G P G P +G KS + ++HY+ CLYAG+ I+G N EVMP QWEF+VG
Sbjct: 144 GWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG 203
Query: 882 PSIGVXA 902
PS+G+ A
Sbjct: 204 PSVGISA 210
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 127 bits (306), Expect = 1e-29
Identities = 62/124 (50%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Frame = +1
Query: 325 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 504
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 505 AIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILL 678
AI+KDPFRRG++ILVMCD Y EP +N R S + ++ + PW+GIEQEY LL
Sbjct: 76 AIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLL 135
Query: 679 DSDL 690
D+
Sbjct: 136 QKDV 139
Score = 67.3 bits (157), Expect = 2e-11
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +3
Query: 765 KSLPETLXEAHYRCCLYAGVPIAGTNAEVMPSQWEFKVGPSIGVXA 902
K+ + +AHY+ C+YAG+ I+G N EVMP QWEF+VGPS+G+ A
Sbjct: 157 KAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAA 202
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 111 bits (266), Expect = 1e-24
Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Frame = +1
Query: 373 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 552
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 553 CDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILLDSDL 690
CD Y N EP +NNR + ++ K +EPW+GIEQEY LL +
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHI 166
Score = 70.5 bits (165), Expect = 2e-12
Identities = 31/67 (46%), Positives = 42/67 (62%)
Frame = +3
Query: 702 GGPRVGSPHRKGHTTAVSVPTKSLPETLXEAHYRCCLYAGVPIAGTNAEVMPSQWEFKVG 881
G P G P +G + KS + +AHY+ CL+AG+ I+G NAEVMP QWEF++G
Sbjct: 171 GWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIG 230
Query: 882 PSIGVXA 902
P +GV A
Sbjct: 231 PVVGVSA 237
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 684 RSAPLSGGPRVGSPHRKGHTTAVSVPTKSLPETLXEAHYRCCLYAG 821
R +P+ G R+G R G+ S P SLP T+ A CL G
Sbjct: 602 RHSPVWAGRRLGLLQRLGYVARASYPLASLPLTVYCALPAVCLLTG 647
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 341 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 240
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 222 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 121
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>12_01_0674 +
5755523-5755613,5756325-5756366,5756830-5756915,
5757008-5757079,5757450-5757525,5757765-5757826,
5758119-5758178,5758293-5758394
Length = 196
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 715 TRGPPERGADLNPVKYIPVL 656
TRG P+ G +NP+KY+P L
Sbjct: 40 TRGDPDYGK-INPIKYVPAL 58
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 28.3 bits (60), Expect = 8.8
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Frame = +1
Query: 328 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLV-PR 504
+ +AT I D +G +L + + + IW+F G + + +L PR
Sbjct: 556 EHFMATDIMWDPTGRYLAS---AVTSVHEMENGFQIWSFSGKQLYKVSKDHFFQFLWRPR 612
Query: 505 AIYKDPFRRGNHILVMCDTY--KYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILL 678
+ + I Y KY E ++ N++S QE + + E W G ++ L
Sbjct: 613 PPSLLTPEKEDEIAKNLRKYSKKYEQEDQDAFNQLSEQERKRRKQLQEEWEGWVAKWKQL 672
Query: 679 DSDLRPFRV 705
+ RP+R+
Sbjct: 673 HEEERPYRM 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,507,112
Number of Sequences: 37544
Number of extensions: 585349
Number of successful extensions: 1639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -