Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D16
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 32 0.54
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 32 0.71
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 5.0
02_02_0310 - 8842286-8843314 24 6.0
01_05_0200 - 19196606-19197304 25 8.1
11_04_0375 + 16933688-16933703,16936291-16937063 28 8.7
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 8.7
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820 23 9.2
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 32.3 bits (70), Expect = 0.54
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +1
Query: 427 YANLRARIIKIPLDDLKTFRI---TRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKN 597
Y NL I +PL D++ R T + + G+ FYF +G A LK
Sbjct: 119 YRNLYT-IKALPLSDVRFIRKHTPTFGFEYIIIVLSSGLAFPPFYFYNGGLRELFATLKK 177
Query: 598 HLKTAKTRHDRNTYMVVEPNDESQVLNKSFAELDI 702
H+ ++ D N ++V ND L KS + L++
Sbjct: 178 HVFIIRSDDDPNVFLV---NDFQDPLQKSLSSLEL 209
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 31.9 bits (69), Expect = 0.71
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 396 TDPKR*HNIGLRESSG--AHHKNTPRRFKNVSHHP*QPTNAVLDETGSLAEYVLFPTWKR 569
T P + H+I + ESS HH N + ++ HHP +P + T ++ T K
Sbjct: 962 THPVQEHSISIEESSDHHEHHHNEEHKAEDCGHHP-KPKDCAPPPTDCISRNCCSNTSKG 1020
Query: 570 RDI 578
+DI
Sbjct: 1021 KDI 1023
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 236 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSPAKI 114
P+L+ ++ S +N S WS + EL+ ++ M+ +P +
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVSSTPGSL 316
>02_02_0310 - 8842286-8843314
Length = 342
Score = 24.2 bits (50), Expect(2) = 6.0
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +3
Query: 135 RHHHHHVYE--FGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNR--DALHCTERRRN* 302
RHHHHH + R P++R H + + R+ ++ D E R
Sbjct: 226 RHHHHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDERELEEMARRW 285
Query: 303 MHR-MATKRLDHHR 341
+ + + + R+ HHR
Sbjct: 286 IRKALMSSRMHHHR 299
Score = 23.0 bits (47), Expect(2) = 6.0
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +3
Query: 132 YRHHHHH 152
+RHHHHH
Sbjct: 191 HRHHHHH 197
>01_05_0200 - 19196606-19197304
Length = 232
Score = 24.6 bits (51), Expect(2) = 8.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 129 LYRHHHHH 152
LY HHHHH
Sbjct: 219 LYHHHHHH 226
Score = 22.2 bits (45), Expect(2) = 8.1
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 138 HHHHHVYE 161
HHHHH Y+
Sbjct: 221 HHHHHHYK 228
>11_04_0375 + 16933688-16933703,16936291-16937063
Length = 262
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 259 SIGMLCIVQNADGTKCIEWRPNDLITI 339
++G L +Q DG+ IEWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYIEWRNNVLINL 32
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 132 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 248
+ HHHHV+ + +T+ Q+ RG+S QC S+ +
Sbjct: 634 FMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671
>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
Length = 357
Score = 22.6 bits (46), Expect(3) = 9.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +3
Query: 132 YRHHHHHVYE 161
+ HHHHH +E
Sbjct: 298 WHHHHHHHHE 307
Score = 21.4 bits (43), Expect(3) = 9.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 117 FSG*LYRHHHHH 152
FS + HHHHH
Sbjct: 295 FSPWHHHHHHHH 306
Score = 20.6 bits (41), Expect(3) = 9.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 141 HHHHVYEFGR*ITRPVQRL 197
HHHH + + P QRL
Sbjct: 299 HHHHHHHHEPTLPTPPQRL 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,344,138
Number of Sequences: 37544
Number of extensions: 478041
Number of successful extensions: 1308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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