Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D14
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 30 0.49
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 1.5
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 2.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.6
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 27 4.5
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 27 4.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.5
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 6.0
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 7.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 7.9
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 26 7.9
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 7.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 7.9
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 522 VQCSISTGELSFDDTIDQIDEEKIDQCIEEAFEELSGSFTSVCQNENSQES 674
+QC T +L FD I+ + + + ++E + SF S+ QN ES
Sbjct: 93 LQCQALTTKLGFDQRIEGMIRDLWALYLSLSYESFTSSFLSLNQNSTQSES 143
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 399 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQI 578
+ QII A+ + + E+D I +S + S TS +R V+ C+ S G SF ++
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582
Query: 579 DE 584
++
Sbjct: 583 EK 584
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +3
Query: 294 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSID 473
RKV + L +K +ID N + + EA++Q + A+S +I + I++ +
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHK 169
Query: 474 RLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDE-EKIDQCI 605
R+ + + + +T ++ D DE EK ++C+
Sbjct: 170 RMRENIWAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 2.0
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Frame = +3
Query: 243 DLKKTTFDSAQLLKKVRRKV--ARQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 401
D +T D+ L+ K+ + A Q+S++ I D +++ + Q ++ + Q +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509
Query: 402 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGEL 551
G+ SA+++E DDI +DRL T+ N+ D + S E+
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSISEI 561
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 312 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 491
L+D ++ DY + N NN N QQ V+ + V + + + S+ +S+
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265
Query: 492 STLRNRK-PDVVQCSISTGELSFDDTIDQIDEEKIDQCI 605
N + P + ++ +G ++FD+ + + + Q +
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAM 304
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 188 FIQVHRLPVFFEFHPLLVTEQDGFQV**FCTHSNVDTLTS*LLARDIKILRN 33
F+ V+ LP+FFE L+ + + G ++ + ++V +L S L + RN
Sbjct: 308 FVIVYELPLFFETTLLMPSSEAGVRIFPYVISTSVGSLCSGLYMKKTGRYRN 359
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 126 LLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKV- 302
+L+N+ + KL + VD D TE+ + +L++ L + +L+K R +
Sbjct: 92 ILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILEKYLRFLN 151
Query: 303 --ARQLSDKSII 332
++LSDK +
Sbjct: 152 PDLQELSDKKAV 163
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 246 LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 362
LK+T +LLKK+ + + + SI+ Y +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 6.0
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 4/169 (2%)
Frame = +3
Query: 213 PAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSD-KSIIDYNDFIRNLQNNEAN-DQQ 386
P+ +S L L + D +L+ R++ + SD KSI + N+ RNLQN +N D++
Sbjct: 847 PSAELEISKLQLDVSACD--RLVAGEERRILQLKSDLKSIRNNNERKRNLQNKISNMDKE 904
Query: 387 FFFVNGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSF-DD 563
+N ++ E + EI + I + ++ K D + +L F D
Sbjct: 905 VEAIN------INNEGLVTEIKTLQDKIMEIGGIRYRIQKSKVDDLH-----EQLKFVKD 953
Query: 564 TIDQID-EEKIDQCIEEAFEELSGSFTSVCQNENSQESVTTLVXXVXSL 707
++++ ++K ++ ++F+ + TS + + + ES+ TL + SL
Sbjct: 954 KLNKMSFKKKKNEQRSQSFQVELSNLTS--EYDTTTESIATLKTELQSL 1000
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 558 DDTIDQIDEEKIDQCIEEAFEELSGSFTSVCQNENSQESVTT 683
D+TI ++DE+KI I A + + ++CQN+ S++ + T
Sbjct: 188 DNTITELDEDKI--YIIGAIVD-KNRYKNLCQNKASEQGIKT 226
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 123 ILLRNEQWMKLEEDWKPVDLDEDRTEEDNEPAM 221
++ N +E WK D+DED+ + EP +
Sbjct: 42 VVKENHLHFGFDEKWKTYDVDEDKVLDYLEPKL 74
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 471 DRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDEEKIDQCIE 608
++L S+ T R++ ++ + EL D+ID I EKID C E
Sbjct: 288 EKLLSSLETERSKLSSLL-LKMQEKELEGSDSIDPILLEKIDVCEE 332
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 423 SIEEICREIDDIFKSIDRLASATSTLR-NRKPDVVQCSISTGELSFDDTIDQIDEEKIDQ 599
S+ R + + KS++ A A T + R+ ++++ + + DD +++ DEE+ D+
Sbjct: 105 SMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADE 164
Query: 600 CIEEAFEEL 626
+ + +E+
Sbjct: 165 LVNKVLDEI 173
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 537 STGELSFDDTIDQIDEEKIDQCIEEAFEELSGSFTSV 647
STG+L D+I ++K++Q + EE+S +SV
Sbjct: 249 STGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKSSV 285
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 7.9
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 237 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 401
ALD KK + LLK+++ K K +++ R ++ A D ++ +
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674
Query: 402 GQIISAVSIEEICREIDDIFK 464
G+ +S I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,829
Number of Sequences: 5004
Number of extensions: 54111
Number of successful extensions: 227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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