Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D12
         (967 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0120 + 12055076-12055175,12055322-12055725                       30   2.4  
03_05_0543 - 25404630-25405408,25405461-25405605                       30   2.4  
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623     29   7.3  
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191...    29   7.3  
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    29   7.3  
06_01_0178 + 1386981-1387505                                           28   9.7  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   9.7  

>06_02_0120 + 12055076-12055175,12055322-12055725
          Length = 167

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -3

Query: 827 GXXGGHRXPXKGXGXGXXXAXRGGXXGGKXXGSGXXXXG 711
           G  GG+  P  G G G      GG  GG   GSG    G
Sbjct: 113 GYGGGYGSPGYGGGSGYGGGYGGGYGGGYGGGSGYGGGG 151


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 727 PDPXXFPPXXPPRXALXXPXPXPXXGXRCPPXXP 828
           P P   PP  PP+     P   P  G R PP  P
Sbjct: 123 PSPVTPPPQQPPQPEPRRPPAAPLPGVRTPPSPP 156


>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
          Length = 400

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -3

Query: 827 GXXGGHRXPXKGXGXGXXXAXRGGXXGGKXXGSGXXXXG 711
           G  GGH     G G     A  GG  GG   G+G    G
Sbjct: 269 GAGGGHGGAGAGAGGARGGAGAGGGHGGAGAGAGGGRGG 307


>01_07_0270 -
           42417782-42417850,42418207-42418342,42418826-42419108,
           42419459-42419507,42419614-42419616
          Length = 179

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/60 (28%), Positives = 22/60 (36%)
 Frame = -2

Query: 714 GVPHLXT*AXIFXMLVPGXGAXGNTPATRPFYGSRPXPRPXXHMFFPGXSPEXGXNXXXR 535
           G+ HL +   +   +VP        P +RPF    P  RP     F G  P  G     R
Sbjct: 72  GIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYR 131


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 414 IXAKKNLPHLXXNXXVLIMPGRRXTLXQPLKQXSHFRTALEVLXNI 277
           I  +K  P+L  +  + + P     + +PL+  S+F TAL ++ N+
Sbjct: 87  IKQRKRTPYLIISSCLSLFPWLILGMSEPLRSSSNFLTALLIVQNL 132


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -3

Query: 830 KGXXGGHRXPXKGXGXGXXXAXRGGXXGGKXXGSGXXXXG 711
           KG  GGH     G G G     +GG  G    G G    G
Sbjct: 60  KGGAGGHGGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGG 99


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +1

Query: 712 PXXXXPDPXXFPPXXPPRXALXXP--XPXPXXGXRCPPXXP 828
           P    P P   PP  PP   +  P   P P  G   PP  P
Sbjct: 269 PPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPP 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,598
Number of Sequences: 37544
Number of extensions: 165118
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)