Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_D10
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    49   8e-07
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   4.8  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    26   6.3  

>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 34/128 (26%), Positives = 57/128 (44%)
 Frame = +3

Query: 357 KLENVQLLDKYNLRNPSKGTLYFATTHLIFVDHEMRKETWILLMHISTVERLPITTAGSP 536
           K+ NV+ ++K N  N   GTL+    H IF   E  KE W     I+ V +L        
Sbjct: 8   KVGNVKFVNKGNELN---GTLHLTAYHSIFSISENGKEIWTAYSMINNV-KLCSNEKSFC 63

Query: 537 LLVRTKTFQSVFFVIPRERDCHEMHQTLLRLSQPVHIDELYCFHYKSTPDDLPKSAGWNF 716
           + ++ + F    +      D  +++ TL  L     I+ LY F+Y  + D+    + W  
Sbjct: 64  IRIQCRDFMFFCWRFQSTEDAMDVYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKS 123

Query: 717 FDIQTEYK 740
           F ++ EY+
Sbjct: 124 FLLENEYR 131



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 764 WVLCTANKDYELCDTYPSEVYVPARASTAGPLGSASFRSRGR 889
           W +   N++Y  C +YP  + VPA  S +       +RS+ R
Sbjct: 148 WRITKINENYSECHSYPQALAVPASISDSVIYYGCKYRSKNR 189


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 735 IRFVCRRNSNRPILVGRRALIYNGSNI 655
           +R+  R+ +N PI +GR    YNG ++
Sbjct: 48  VRYWNRKQNNLPIYIGRYTERYNGGDV 74


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 567 VFFVIPRER-DCHEMHQTLLRLSQPVHIDELYCFHYKSTPDDLPKSAGWNFF 719
           VFF + + + + +   +    L +P  ++ L+   Y+ T D++ +  GWN F
Sbjct: 389 VFFDVDQTKNEIYSKRRDQHNLMRPETVESLFIL-YRITRDEIYREWGWNIF 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,846,670
Number of Sequences: 5004
Number of extensions: 83708
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)