Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D06
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 50 6e-07
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 48 2e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 47 3e-06
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 35 0.014
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 34 0.031
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 32 0.13
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 32 0.13
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 30 0.39
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 29 0.67
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.67
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 29 1.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.3
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 49.6 bits (113), Expect = 6e-07
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Frame = +2
Query: 119 VSELVWGIKNGDIDQVKDIIENKKIDVNASID-GRVPLHYAADYGQTTVLNYLLNKGADP 295
+ L G++D VK++I ++KIDVNA+ + G LH+AA Q + +LL GAD
Sbjct: 1 MGSLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADV 60
Query: 296 NVVDKHGISVLLAAI-WEGHTDCVKT---LLKNGASKNGKTPDGTPYLEAA 436
N + G + A I W VKT L+++GA K G L A
Sbjct: 61 NAI---GGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLA 108
Score = 43.2 bits (97), Expect = 5e-05
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +2
Query: 128 LVWGIKNGDIDQVKDIIENKKIDVNASIDGRV---PLHYAADYGQTTVLNYLLNKGADPN 298
L W N I K ++E+ DVNA I G + P+H+AA G ++YL+ GADP
Sbjct: 38 LHWAALNQQIPICKFLLEHGA-DVNA-IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPL 95
Query: 299 VVDKHGISVLLAAI 340
+ DK G + L A+
Sbjct: 96 LKDKQGFNCLHLAV 109
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 224 PLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNG 385
PL +A+ +G + N LL GAD D+ ++ L +I G+ C+K +LK G
Sbjct: 137 PLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +2
Query: 209 IDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 388
+ G+ PLH AA G+ V+ YL+++ A N D +G + L A+ EGH D L++ GA
Sbjct: 139 LQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
Query: 389 SKNGKTPDGTPYLE 430
K + LE
Sbjct: 199 DTLRKDSENHTALE 212
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 158 DQVKDIIENKKIDVNA-SIDGRVPLHYAADYGQTTVLNYLLNK-GADPNVVDKHGISVLL 331
+ V+ I+N +NA D R PLH+A G+ + +LL + P+ D+ G + L+
Sbjct: 17 EYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLM 76
Query: 332 AAI 340
+I
Sbjct: 77 ISI 79
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +2
Query: 236 AADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDG 415
AA G+T V+ L+ G PN D++G + + AA+ GH+D +K L++ G N + DG
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 416 TPYLEAAEK 442
L EK
Sbjct: 71 ETPLFVCEK 79
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 113 SSVSELVW-GIKNGDIDQVKDIIENKKIDVNASIDGRVPLHYAADYGQTTVLNYLLNKGA 289
S+ + +W +G D V +++ A +G P+H A YG + +L L+ +G
Sbjct: 2 STTTPNIWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGG 61
Query: 290 DPNVVDKHG 316
D N+ D+ G
Sbjct: 62 DINIRDQDG 70
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 35.1 bits (77), Expect = 0.014
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = +2
Query: 215 GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 388
GR LH A G + +L N G D N D G + L A H D LL NGA
Sbjct: 862 GRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGA 919
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 182 NKKIDVNA-SIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 316
N DVN G PLHYA+ Y + LL+ GA P+V+ G
Sbjct: 883 NAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASG 928
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 33.9 bits (74), Expect = 0.031
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +2
Query: 128 LVWGIKNGDIDQVKDIIENKKIDVNASIDGRVP-LHYAADYGQ-TTVLNYLLNKGADPNV 301
L IK ++ + ++ + + ++ G VP L G ++ L+ G +PN
Sbjct: 303 LTLAIKGNHVEALHALLSAQDKETTSTKPGPVPPLVLTCCVGDYDLIVEELILAGFNPNE 362
Query: 302 VDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGK 403
VD + L A+ +CVK LLK GA+ + +
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSAR 396
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 101 LKSTSSVSELVWGIKNGDIDQVKDIIENKKIDVNASID--GRVPLHYAADYGQTTVLNYL 274
+ T EL + GD++ VK ++EN +N +D PL A+ G V+ +L
Sbjct: 47 VNDTQEFLELCEACRRGDLEVVKSLVENYNTPIN-QVDQFDYSPLVLASLCGHEPVVKFL 105
Query: 275 LNKGA 289
L GA
Sbjct: 106 LENGA 110
Score = 29.1 bits (62), Expect = 0.89
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 248 GQTTVLNYLLNKGADP-NVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDGTPY 424
G V+ L+ P N VD+ S L+ A GH VK LL+NGA T G
Sbjct: 63 GDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERC 122
Query: 425 LEAAEKD 445
L A D
Sbjct: 123 LYGALND 129
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 146 NGDIDQVKDIIE--NKKIDVNASID-GRVPLHYAADYGQTTVLNYLLNKGADPNV 301
NG I V+ II NK++ +NA + G +H+AA G + LL G DP++
Sbjct: 46 NGHIAVVQKIIPYLNKEV-INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 194 DVNASID--GRVPLHYAADYGQTTVLNYLLNKGAD 292
DVNA ID G LH+AA G +++ LL GA+
Sbjct: 228 DVNAGIDEDGHTALHWAAAMGNLEMMHALLQAGAN 262
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 200 NASIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 316
N + PLHYA ++ LL GADP +++ +G
Sbjct: 428 NVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNG 466
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 29.5 bits (63), Expect = 0.67
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 191 IDVNASID--GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAI 340
+D++ ID G LH+AA + +L L++KGA+P + G + L+ ++
Sbjct: 347 LDLDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETALMRSV 398
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 DGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLL-AAIWEGHTDC 361
DG LH+A G ++ LL AD V ++ + L+ + I+ + DC
Sbjct: 247 DGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDC 297
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 531 DSYKNSTIYFFKASNYNKSIIFVCSKV*WFERKLFLIMHP*SSF 662
D KN + S+YNK + K+ W ER+ +++ S+
Sbjct: 939 DELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESY 982
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,235
Number of Sequences: 5004
Number of extensions: 67590
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -