Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D04
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 34 0.12
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 32 0.48
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 31 0.84
AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.84
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p... 30 2.6
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 29 5.9
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 29 5.9
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 29 5.9
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 29 5.9
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAAN 664
LQ A + VQ + K + SNV E + + I DD K ++ K ++E +
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAKSLEETTD 362
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 467 KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKK 646
+N + +K VQ + QK+ KK + NVQ+ +K A K AKN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 108 YIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 281
Y K V C++ + + D +F KDI+ K+ HKTLE + + K +D Q
Sbjct: 572 YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627
>AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical
protein ZK973.11 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.84
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 219 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 326
+EFHKT E+ L K D + F AW DGS+ Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
protein R05D3.1 protein.
Length = 1053
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 162 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 317
G +A ++F D++HHT F T + + +D D K W SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical protein
B0464.2 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 521 QESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ*ASI 685
++ K AKK S +E + P + K +E +K+QE +AKQ A I
Sbjct: 977 RKKDKAAKKASRKKRERRDSGGPDSNRRDEKKRKRKEERDRKLQEKLSAKQSAKI 1031
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 GIP*DFXHTPLCCSPVRISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRS--RLLQG 202
G+P D P P + SS+ + HH + S+ R S+ AT RS R +
Sbjct: 104 GVPSDVAPPPPLPIPNQSSSSAASYQHHHASSISKSISSSREDLLSEHATSRSTVREIPV 163
Query: 203 HRTP 214
HR P
Sbjct: 164 HRAP 167
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 GIP*DFXHTPLCCSPVRISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRS--RLLQG 202
G+P D P P + SS+ + HH + S+ R S+ AT RS R +
Sbjct: 104 GVPSDVAPPPPLPIPNQSSSSAASYQHHHASSISKSISSSREDLLSEHATSRSTVREIPV 163
Query: 203 HRTP 214
HR P
Sbjct: 164 HRAP 167
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 GIP*DFXHTPLCCSPVRISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRS--RLLQG 202
G+P D P P + SS+ + HH + S+ R S+ AT RS R +
Sbjct: 104 GVPSDVAPPPPLPIPNQSSSSAASYQHHHASSISKSISSSREDLLSEHATSRSTVREIPV 163
Query: 203 HRTP 214
HR P
Sbjct: 164 HRAP 167
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 29 GIP*DFXHTPLCCSPVRISSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRS--RLLQG 202
G+P D P P + SS+ + HH + S+ R S+ AT RS R +
Sbjct: 104 GVPSDVAPPPPLPIPNQSSSSAASYQHHHASSISKSISSSREDLLSEHATSRSTVREIPV 163
Query: 203 HRTP 214
HR P
Sbjct: 164 HRAP 167
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 454 GGPCGAPRPCARCSASTVPKPP 389
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,334
Number of Sequences: 27780
Number of extensions: 240601
Number of successful extensions: 1126
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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