Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_D02
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0867 - 6600847-6601413,6601954-6602181 30 2.8
11_04_0147 - 14095039-14095937,14096914-14097379 29 3.6
02_05_0734 + 31318380-31318610,31319422-31319988 29 3.6
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 29 4.8
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 29 4.8
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 29 6.4
05_07_0051 - 27338512-27338617,27338790-27338950 28 8.4
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 28 8.4
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 8.4
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 455 HCPHWCPCEILDYEFQNVHD*K*SPYHDYCGSCYSNEHIFRQAF 324
HC W P IL F N S YHD Y N++ F Q F
Sbjct: 186 HCGLWLPGNILHVFFSNN-----SAYHDIHHQLYGNKYNFSQPF 224
>11_04_0147 - 14095039-14095937,14096914-14097379
Length = 454
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 437 GTNVDSDSLSKVLRGLGFSVTVLH-NLRAED 526
G + L+ VLR GFS+TVLH LRA D
Sbjct: 17 GHTIPMFHLAAVLRSRGFSITVLHTELRAPD 47
>02_05_0734 + 31318380-31318610,31319422-31319988
Length = 265
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 455 HCPHWCPCEILDYEFQNVHD*K*SPYHDYCGSCYSNEHIFRQAF 324
HC W P IL F N S YHD Y N++ F Q F
Sbjct: 187 HCGLWLPGNILHALFNNN-----SAYHDIHHQLYGNKYNFSQPF 225
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 221 KKNNGSGTEQRKNGNEDEGDAWGSHG---SSQGRRYAKMPVERYAHYYNMNHNNRG 379
+ NG G Q NG GD + +G + G RY + E Y + H G
Sbjct: 475 QNGNGGGYHQNGNGYHQNGDGYHQNGNRYNQNGNRYHQNGDEYYQNGNGNGHRQNG 530
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 233 GSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVERYAH 349
GSG+ ++ NG + S GS G++ K R+ H
Sbjct: 541 GSGSRKKSNGKHENSSDDDSDGSCDGKKKKKAKKTRFTH 579
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 203 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPV 334
K A+ E+ N R G D G +G + + GRR A PV
Sbjct: 327 KPAEGERYYNPGRGRGRGRGRGDRGGFYGGYNGNGGRRQAAAPV 370
>05_07_0051 - 27338512-27338617,27338790-27338950
Length = 88
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 239 GTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVE 337
G Q NG E EG GS+ GRR+ +M E
Sbjct: 55 GVPQSVNGEETEGIGRRRGGSNDGRRHGEMAPE 87
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 148 KMEFLIYV--DVVKMESVKNNNKNYHD 74
K+ F+I+V +ES++NNNKNY D
Sbjct: 222 KVNFVIFVVNGASVLESIENNNKNYID 248
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 203 KMADEEKKNNGSGTEQRKNGNEDEGDAWGSHGSSQGRRYAKMPVER 340
K+ + +++ G G+E +ED+ D GS S + ER
Sbjct: 126 KVGGDREEDKGGGSESGSGSDEDDSDGSGSDDSEDSEEERRREEER 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,791,359
Number of Sequences: 37544
Number of extensions: 409790
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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