Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_C23
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 63 6e-11
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 46 5e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 6e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 6e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 6e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 39 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.004
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.007
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.010
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.013
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 34 0.023
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.023
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 34 0.023
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.023
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.030
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.069
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.091
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.37
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 28 2.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 27 2.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 3.4
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 4.5
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 4.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 4.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 4.5
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 26 6.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 6.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 7.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 26 7.9
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.9
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 7.9
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 62.9 bits (146), Expect = 6e-11
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 576 GFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN-HE*LSHGE 752
GF++ QM YFSQFG V R+ R+R+TG SK YAF+EF VA +VAE H L +G+
Sbjct: 115 GFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGK 174
Score = 33.1 bits (72), Expect = 0.052
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 272 GLVYLGHIPHGFYEVGYNSFFALIGKLPSHRRRR 373
G++Y+G +PHGFYE +F+ G + R R
Sbjct: 105 GVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSR 138
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP-AVAQIVAENH 731
+ YF QFG V +C V+R TGRS+G+ F+ F +P V +++++ H
Sbjct: 179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH 225
Score = 35.5 bits (78), Expect = 0.010
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
+ + +F+QFG V + ++ + TGR +G+ FV + + + + HG+ ++
Sbjct: 260 EEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVE 318
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 41.1 bits (92), Expect = 2e-04
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
+ Q+ F Q G V + +++ +G+ KGY F E+HDPA A N
Sbjct: 18 EEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 600 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ-IVAEN 728
Q F ++G + RVI ++GRSKGY +V+F P A+ VA N
Sbjct: 281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
FS+FG + +C+VIR + TG S YAF+EF
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF-HDPAVAQIVA 722
++ +F Q G V + +++R + +GRSKG A+VEF H+ +V +A
Sbjct: 255 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.5 bits (88), Expect = 6e-04
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ ++ F +FGG+ + + + TGR+KG+AFV ++D
Sbjct: 215 EEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ QMT+ F+Q G V +++ TG KGY F EF D
Sbjct: 20 EQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
FS+FG + ++R + TG+SKG+AF+++ D + +N
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDN 91
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
F+++G + RV+R++ TG+S GYAFV F
Sbjct: 120 FTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 603 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 701
+F + G V + R+ + +GR KGYAFVEF +P
Sbjct: 111 HFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
+ Q+ F+ FG V N + RRTG KGYA +E+
Sbjct: 23 EEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.013
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 701
Q+ + FS+FG + +C + T SKGY FV F P
Sbjct: 436 QLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.3 bits (75), Expect = 0.023
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAV 707
++ +F+ G V+ ++ + TG KG+A++EF +P++
Sbjct: 70 ELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.3 bits (75), Expect = 0.023
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
Q +T +FS G + + V+ + TG ++GY FV F
Sbjct: 18 QDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 34.3 bits (75), Expect = 0.023
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ + +YF G + R++R +T KG+A+++F D
Sbjct: 283 EEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 600 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ F+ G V++ RV R T RS GYA+V FH+
Sbjct: 98 ELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHN 130
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
FS FG + +C+V G +KGY FV F A E+
Sbjct: 188 FSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEH 227
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA-QIVAENHE*LSHGEKI 758
FS FG +++ +++ + G+SKG+ FV + P A + V E ++ + G+ +
Sbjct: 384 FSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.9 bits (74), Expect = 0.030
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
+ ++ Q FS+FG V++ R++R T S+G+ F+ F A +N
Sbjct: 114 EDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.069
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 600 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDP 701
Q ++ G ++IR+R TG + GY FVEF P
Sbjct: 111 QVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASP 144
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 603 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ S++ + +++ +T S+GY FV F D
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.091
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ ++F Q G + R++ TG+ KG+ FV+F D
Sbjct: 244 LKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.37
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ + F FG + + ++T KG+A+++FHD
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
Q+ FS FG + + + +G SKGY FV F
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 603 YFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQI 716
Y ++FG VS+ + I T KGY F F + A I
Sbjct: 315 YTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALI 352
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 83 HILNYEIKWKKTLRWILATQKKFIKSIKGLQKTIK 187
+ LN++ W+ ++R L+ K FIK K KT+K
Sbjct: 117 YYLNHDGGWQNSIRHNLSLNKAFIKVEKPKGKTLK 151
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF--HDPAVAQIVAENHE 734
FS G + + GRSKGY FV + + A A I A N++
Sbjct: 119 FSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 672 GYAFVEFHDPAVAQIVAENH 731
G AF+ F A AQIVA+ H
Sbjct: 388 GQAFITFESMATAQIVAQTH 407
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 113 SSILFRNLKCDFKQKLRSVNKKQILRNSL 27
SS + N K D K+ +RS+NK NS+
Sbjct: 338 SSEIIENTKADIKKSIRSLNKAVSPENSI 366
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +3
Query: 588 HQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
H + Q F G+S V+ R +K Y + E P ++ ++ N
Sbjct: 487 HSLAQQFPSALGISFISVVEGMRKRLAKSYVYPEIKFPEISDLLFFN 533
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 722 SNNLCDSRIMKLYKCISFRSASAP*SDHSTVRNTSKLTEVLCHLM 588
+NN DS I K+ + SFR P ST R+ TE + H++
Sbjct: 201 TNNSLDSSIRKIIRMQSFRGPLEPFKYSSTTRHKVS-TESIFHVL 244
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 531 IAFWAEIGRVVVTYPRPLTRPTTSKKLINDVRFFYWYLQQIKLF 400
+ ++ + G V+ P + RP + LIN +Y+Y+ + +F
Sbjct: 167 VVYYVDYGVTYVSVPS-IVRPFLKRSLINLGFLYYFYMAAVAIF 209
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 615 FG-GVSNCRVIRSRRTGRSKGYAFVEF 692
FG GV++ R++ T RS+G+ +VEF
Sbjct: 114 FGEGVTSIRLVIDPLTERSRGFGYVEF 140
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
F+ G V R I TGRSKG+ V+F +
Sbjct: 300 FTDIGSVIRAR-IAYEPTGRSKGFGVVQFEN 329
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 576 GFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 713
G ++ F FG + C I RT S+ +AFVE+ D A+
Sbjct: 17 GMRARELAYEFEPFGPLIRCD-IPIPRTRTSRPFAFVEYEDSRDAE 61
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
F FG + + + R + + YAFVEF +P A+ EN
Sbjct: 26 FIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMEN 65
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 606 FSQFGGVSNCRVI-RSRRTGRSKGYAFVEF 692
FS+FG VSN +I +S G + +A++ F
Sbjct: 25 FSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,109
Number of Sequences: 5004
Number of extensions: 72267
Number of successful extensions: 221
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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