Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_C23
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 49 5e-06
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 49 5e-06
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 41 0.001
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 40 0.002
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 40 0.002
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 40 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.009
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 38 0.009
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 38 0.009
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 37 0.016
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 37 0.021
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 37 0.021
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 37 0.021
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.021
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 36 0.028
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 36 0.028
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 36 0.028
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 36 0.028
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 36 0.028
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 36 0.049
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.065
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 35 0.065
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 35 0.065
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 35 0.065
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.086
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 35 0.086
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 35 0.086
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 35 0.086
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 35 0.086
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 35 0.086
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 34 0.15
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 34 0.15
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 34 0.15
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 34 0.15
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 34 0.15
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 34 0.15
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 34 0.15
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 34 0.15
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.20
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.26
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 33 0.35
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 0.80
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 4.3
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 29 4.3
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 4.3
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 4.3
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 4.3
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 29 4.3
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 5.7
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 9.9
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +3
Query: 543 YLQLFRLISFVGFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVA 722
Y+ + I F GFF+ ++ YF QFG V RV R+RRTG KG+A+V F + AVA+I A
Sbjct: 32 YVVKIKRIPF-GFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAA 90
Query: 723 EN 728
E+
Sbjct: 91 ES 92
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 713
+ + YFSQ G VSN R++ R TGR +G+AFVEF + A AQ
Sbjct: 17 EDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQ 59
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
+ YF +FG V+ C V+R T R++G+ F+ F DP+ V N E G+KID
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKID 116
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
+ YF +FG V+ C V+R T R++G+ F+ F DP+ V N E G+KID
Sbjct: 61 LRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKID 116
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ ++ YF+ G V+N R++ R TGR +G+AFVEF + A AQ E
Sbjct: 19 EEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ ++ +FS G ++N R++ R TGR +G+AF+EF + AQ E
Sbjct: 18 EEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
FS+FG ++NC ++R RR+G S YAF+EF
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
FS+FG ++NC ++R RR+G S YAF+EF
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
FS+FG ++NC ++R RR+G S YAF+EF
Sbjct: 192 FSRFGKINNCEIVRDRRSGDSLQYAFIEF 220
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
FS+ G V + +++ R TG+ KGY F+EF D A++ N
Sbjct: 38 FSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LS 743
FSQ+G V N +IR + TG+SKG+AF+ + D + +N +S
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGIS 103
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 600 QYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEK 755
+YF QFG + VI R T +S+GY FV D A A+ ++ + G K
Sbjct: 53 EYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRK 104
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ ++FS G V + R+I RTGRSKG +VEF D
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD 75
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ ++FS G V + R+I RTGRSKG +VEF D
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD 220
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 576 GFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
G Q ++ F+ G + +C+++R + TG+S GY FV +
Sbjct: 52 GMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNY 90
Score = 32.7 bits (71), Expect = 0.35
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 600 QYFSQFGGVSNCRVIRSRRTGRSKGYAFV 686
Q FSQFG + N +++R T + KGYAFV
Sbjct: 392 QLFSQFGAIVNVKILRD-LTQQCKGYAFV 419
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 588 HQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
H++ F FG + R++ TG SKG FV F
Sbjct: 142 HELESIFRPFGQIITSRILSDNVTGLSKGVGFVRF 176
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ +F+Q+G V+ +V R GRS+G+AFVEF
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ +F+Q+G V+ +V R GRS+G+AFVEF
Sbjct: 45 LSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
F++FG VS +VIR +T +SKGY FV F
Sbjct: 155 FTKFGEVSEAKVIRDVQTQKSKGYGFVSF 183
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ + F FG VS+ +VIR T +SKGY FV +
Sbjct: 37 KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 70
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ + F FG VS+ +VIR T +SKGY FV +
Sbjct: 47 KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 80
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ + F FG VS+ +VIR T +SKGY FV +
Sbjct: 150 KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ + F FG VS+ +VIR T +SKGY FV +
Sbjct: 118 KLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
M +++SQFG +++ V+R T RS+G+ FV F + + G+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
M +++SQFG +++ V+R T RS+G+ FV F + + G+ +D
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
M +++SQFG +++ V+R T RS+G+ FV F + + G+ +D
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
M +++SQFG +++ V+R T RS+G+ FV F + + G+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
M +++SQFG +++ V+R T RS+G+ FV F + + G+ +D
Sbjct: 39 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
+T + +Q G V R++R + TG+ KG+AFV F
Sbjct: 263 ITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.1 bits (77), Expect = 0.065
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ + F +FG VS ++IR T + KGY FV +
Sbjct: 147 KLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSY 180
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKIDKSCLHTT 782
F+Q G V ++I G + YAFVEF D A + ++H +G ++ + +H T
Sbjct: 60 FNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSH----NGRELLEKEMHVT 111
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 570 FVGFFQH-----QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
F+G H Q+ YFSQ+G V + VIR T S+G+ FV F
Sbjct: 52 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 570 FVGFFQH-----QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
F+G H Q+ YFSQ+G V + VIR T S+G+ FV F
Sbjct: 72 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 570 FVGFFQH-----QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
F+G H Q+ YFSQ+G V + VIR T S+G+ FV F
Sbjct: 73 FIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 34.7 bits (76), Expect = 0.086
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
F ++G VS +V+ ++TG KG+A VEF P A
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAA 333
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.086
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN-HE*LSHGEKI---- 758
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + H+ G +
Sbjct: 229 LEKVFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Query: 759 ----DKSCLHTT**TKMGHEIHMEPSEQSCLNTNLKLKN 863
KS H K HE H Q NL +KN
Sbjct: 287 CRAQKKSERHAE--LKKKHEQHKAERMQKYQGVNLYVKN 323
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 713
FS FG + +C+V G SKGY FV F AQ
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQ 174
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ + F +G +++ +V+ GRSKG+ FV F P A
Sbjct: 333 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEA 370
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 34.7 bits (76), Expect = 0.086
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN-HE*LSHGEKI---- 758
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + H+ G +
Sbjct: 169 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 226
Query: 759 ----DKSCLHTT**TKMGHEIHMEPSEQSCLNTNLKLKN 863
KS H K HE H Q NL +KN
Sbjct: 227 CRAQKKSERHAE--LKKKHEQHKAERMQKYQGVNLYVKN 263
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ + F +G +++ +V+ GRSKG+ FV F P A
Sbjct: 273 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEA 310
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 34.7 bits (76), Expect = 0.086
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN-HE*LSHGEKI---- 758
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + H+ G +
Sbjct: 166 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 223
Query: 759 ----DKSCLHTT**TKMGHEIHMEPSEQSCLNTNLKLKN 863
KS H K HE H Q NL +KN
Sbjct: 224 CRAQKKSERHAE--LKKKHEQHKAERMQKYQGVNLYVKN 260
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 713
FS FG + +C+V G SKGY FV F AQ
Sbjct: 77 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQ 111
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ + F +G +++ +V+ GRSKG+ FV F P A
Sbjct: 270 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEA 307
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.7 bits (76), Expect = 0.086
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN-HE*LSHGEKI---- 758
+ + F++FG +++C V+ G+SKG+ FV F +P A+ + H+ G +
Sbjct: 229 LEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Query: 759 ----DKSCLHTT**TKMGHEIHMEPSEQSCLNTNLKLKN 863
KS H K HE H Q NL +KN
Sbjct: 287 CRAQKKSERHAE--LKKKHEQHKAERMQKYQGVNLYVKN 323
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQ 713
FS FG + +C+V G SKGY FV F AQ
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQ 174
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ + F +G +++ +V+ GRSKG+ FV F P A
Sbjct: 333 LKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEA 370
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 34.7 bits (76), Expect = 0.086
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD 698
+ + F ++ +V+R RT +SKGY FV F D
Sbjct: 219 LAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRD 253
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 546 LQLFRLISFVGFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
L +F L S+ + + F +FG ++ C ++ R +G S+G+ F+ F+
Sbjct: 78 LGVFNLSSYTT--EKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFN 125
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 609 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
S++G +++ + I + T KGY FV+F P A
Sbjct: 128 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAA 161
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 609 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
S++G +++ + I + T KGY FV+F P A
Sbjct: 102 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAA 135
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
+ + + F++FG + +C V+R + G+S+G AFV F + + A + +
Sbjct: 155 EENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATK 200
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
FS++G + N + RRTG KGYA VE+
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEY 103
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
FS FG + +C+V G SKGY FV F AQ E
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIE 203
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ +FS FG +++ +V+ GRSKG+ FV F P A
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEA 396
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAE 725
FS FG + +C+V G SKGY FV F AQ E
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIE 203
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 594 MTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVA 710
+ +FS FG +++ +V+ GRSKG+ FV F P A
Sbjct: 359 LRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEA 396
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 32.7 bits (71), Expect = 0.35
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 606 FSQFGGVSNCRVIRSRRTGRSKGYAFVEFH 695
F ++G V +C ++R + T SKG FV F+
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 582 FQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF---HDPAVAQIVAENHE*LSHGE 752
F+ + F + G + + R++ +G S+GYAFV + D A A + HE +S G+
Sbjct: 212 FEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHE-ISTGK 270
Query: 753 --KIDKSCLHT 779
K++ S +T
Sbjct: 271 PLKVNVSIANT 281
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEKID 761
Q+ YF ++G + + + TG +G+A + F A E + G+++D
Sbjct: 40 QLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVD 96
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 576 GFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE*LSHGEK 755
G ++ Q+F G VS + R +G KG+A+VEF + Q + L G +
Sbjct: 88 GATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQ 147
Query: 756 I 758
I
Sbjct: 148 I 148
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 609 SQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAENHE 734
S+FG + + + + +G SKG AFV F P A E E
Sbjct: 284 SKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGVE 325
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 81 ELREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 113
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
+ + + F FG + + + TG K +AFVE+ P A + E+
Sbjct: 115 EDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
+ + + F FG + + + TG K +AFVE+ P A + E+
Sbjct: 115 EDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPAVAQIVAEN 728
+ + + F FG + + + TG K +AFVE+ P A + E+
Sbjct: 115 EDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ ++F +F V + ++++S G+SKGY F+ F
Sbjct: 82 ELREHFEKFFAVKDVKMVKSL-DGQSKGYGFITF 114
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHD-PAVAQIVAE 725
+ ++ F + G V + R + TG KG+AFV F A+ +AE
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE 236
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 585 QHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEFHDPA 704
+ ++ + F +G + ++ G+ +GYAF+E+ D A
Sbjct: 117 ESKLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKA 155
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 591 QMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVEF 692
++ ++F+ G V+ + + + TG K +AFVEF
Sbjct: 61 EIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEF 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,305
Number of Sequences: 27780
Number of extensions: 407729
Number of successful extensions: 1031
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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