Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C23
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   0.52 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   8.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   8.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/70 (18%), Positives = 33/70 (47%)
 Frame = +3

Query: 510 LFLPKKLYFTNYLQLFRLISFVGFFQHQMTQYFSQFGGVSNCRVIRSRRTGRSKGYAFVE 689
           + L  +L+ T Y  + + ++    F     QY+  F G +   +  + +  R  G+  ++
Sbjct: 179 IILADELHLTEYKLVEKWVNSSEIFYTTSQQYYGHFAG-NFSSISITFKLAREMGFFMMD 237

Query: 690 FHDPAVAQIV 719
           ++ P++  +V
Sbjct: 238 YYIPSILIVV 247


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 404 YSRRSINNQGL 372
           YS  SINNQGL
Sbjct: 801 YSEESINNQGL 811


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 522 KKLYFTNYLQLFRLISFV 575
           KKLY  NY +L+  I+++
Sbjct: 97  KKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 522 KKLYFTNYLQLFRLISFV 575
           KKLY  NY +L+  I+++
Sbjct: 97  KKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 522 KKLYFTNYLQLFRLISFV 575
           KKLY  NY +L+  I+++
Sbjct: 97  KKLYCNNYRKLYYNINYI 114


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 166 RIAKNYKEEKNASEGSDPRHP*STRRENKKKETCK 270
           RI +      N S    PR P S  R + K+E  K
Sbjct: 306 RIHRGRGSVHNGSNNGSPRSPESNSRCSVKREKIK 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,112
Number of Sequences: 438
Number of extensions: 4826
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)