Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C22
         (994 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical ...    29   6.8  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   9.0  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AF016442-1|AAB65918.1|  340|Caenorhabditis elegans Hypothetical
           protein K12B6.3 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 385 LCGCASE*RLLAPACCSWAAFWACKGDGSSG 293
           LCGCA    L AP C     FW   GD   G
Sbjct: 216 LCGCAGTVGLFAPTCNKKNGFW--PGDSCGG 244


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +2

Query: 842 PPPPXXXPLXATSXXXPXTEXXXSSLPXPXIPXPSXXXXPPXPLXDP 982
           PPPP       T      T    SS+P P  P P      P P   P
Sbjct: 768 PPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPP 814


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +2

Query: 842 PPPPXXXPLXATSXXXPXTEXXXSSLPXPXIPXPSXXXXPPXPLXDP 982
           PPPP       T      T    SS+P P  P P      P P   P
Sbjct: 768 PPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPPP 814


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 845 PPPXXXPLXATSXXXPXTEXXXSSLPXPXIPXPSXXXXPPXP 970
           PPP   P  A     P  +      P P  P P     PP P
Sbjct: 112 PPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPP 153


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +2

Query: 824 TXPXXNPPPPXXXPLXATSXXXPX-TEXXXSSLPXPXIPXPSXXXXPPXPLXDP 982
           T P   PPPP   P  + S      ++      P P I  PS    PP P   P
Sbjct: 468 TTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,206,345
Number of Sequences: 27780
Number of extensions: 236886
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)