Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C21
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   5.2  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   6.9  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   9.1  

>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 161 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGT 307
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 128  QQRCSLLDI*ERLHXIGYKNLPTSKSXXGIPL 33
            +++CS+ D  E     GYK  P ++   G+PL
Sbjct: 1308 EEQCSVDDAFEWRQPTGYKRTPLTECEGGVPL 1339


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 WLVCLANVHAFVKRDAPKEDNSLNTLAE 223
           WL CL NV    +   P+++N L +L++
Sbjct: 170 WLTCLHNVFLVGEMITPEDENVLRSLSD 197


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -1

Query: 279 GAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQTSHTR 133
           GA      SL SSI   A      R L+S  A R+T    L+R  +H R
Sbjct: 166 GAPLPQQKSLGSSIGHMATRCISCRPLTSGSARRITGFLRLSRMPNHFR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,469
Number of Sequences: 5004
Number of extensions: 36963
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)