Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C19
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    31   0.28 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    28   2.0  

>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 126 MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFER 245
           MA R TQLQDTI++ A  F +SI  L         PG E+
Sbjct: 1   MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQEK 40


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 423 EAAEQLEEVVRQGEILLEKIQ 485
           E   Q +EVV+QG++LL K+Q
Sbjct: 376 EKNRQYQEVVKQGDVLLNKLQ 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,062
Number of Sequences: 5004
Number of extensions: 53957
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)