Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C13
         (1405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    33   0.64 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    32   0.85 
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    32   0.85 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.0  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   2.6  

>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
 Frame = -1

Query: 757 PXXNXXKPQXSH--PXSFF-PTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPP 587
           P  +   P   H  P  ++ P P +    P P    P  P                PPPP
Sbjct: 148 PSMSNGAPYYPHMNPSPYYQPRPNYVTQPPAPIIPPPQPPVMTASAAAAAYRDRLPPPPP 207

Query: 586 XP*XGXFXXXXPXGFXXFLGXGIPPPLXXXP 494
            P         P G   + G GIPPP    P
Sbjct: 208 KPPMPDLRTKEPIGIRSWNGSGIPPPPILPP 238


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 24/71 (33%), Positives = 29/71 (40%)
 Frame = -1

Query: 706 PTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPPXP*XGXFXXXXPXGFXXFLG 527
           P P   +G P P  ++P    P  F        GF PPPP    G F    P     F+G
Sbjct: 270 PPPHHPYGPPHPM-HHPYAMMPPPF--------GFFPPPPR---GHFPPPPPH----FMG 313

Query: 526 XGIPPPLXXXP 494
            G+PPP    P
Sbjct: 314 RGMPPPFMPPP 324


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 32.3 bits (70), Expect = 0.85
 Identities = 24/71 (33%), Positives = 29/71 (40%)
 Frame = -1

Query: 706 PTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPPXP*XGXFXXXXPXGFXXFLG 527
           P P   +G P P  ++P    P  F        GF PPPP    G F    P     F+G
Sbjct: 270 PPPHHPYGPPHPM-HHPYAMMPPPF--------GFFPPPPR---GHFPPPPPH----FMG 313

Query: 526 XGIPPPLXXXP 494
            G+PPP    P
Sbjct: 314 RGMPPPFMPPP 324


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/76 (31%), Positives = 25/76 (32%)
 Frame = -1

Query: 736 PQXSHPXSFFPTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPPXP*XGXFXXX 557
           P    P +  P P    G   P T  P  P P    P      G  PPPP P  G     
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 772

Query: 556 XPXGFXXFLGXGIPPP 509
            P     F G   PPP
Sbjct: 773 PPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/76 (31%), Positives = 25/76 (32%)
 Frame = -1

Query: 736 PQXSHPXSFFPTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPPXP*XGXFXXX 557
           P    P +  P P    G   P T  P  P P    P      G  PPPP P  G     
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 772

Query: 556 XPXGFXXFLGXGIPPP 509
            P     F G   PPP
Sbjct: 773 PPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 24/76 (31%), Positives = 25/76 (32%)
 Frame = -1

Query: 736 PQXSHPXSFFPTPVWXFGXPXPXTNNPXRPXPQKFXPF*KXXGGFXPPPPXP*XGXFXXX 557
           P    P +  P P    G   P T  P  P P    P      G  PPPP P  G     
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLP---PISGGPPPPPPPPGGCPPPP 355

Query: 556 XPXGFXXFLGXGIPPP 509
            P     F G   PPP
Sbjct: 356 PPPPPGGFKGGPPPPP 371


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 29/84 (34%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
 Frame = -1

Query: 736 PQXSHPXSFFPTPVWXFGXPX----PXTNNPXRPX----PQKFXPF*KXXGGFXPPPPXP 581
           PQ   P +F P P   FG P     P    P  P     P  + P     GGF PPPP  
Sbjct: 382 PQSGPPGAFAPPPS-AFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440

Query: 580 *XGXFXXXXPXGFXXFLGXGIPPP 509
             G +    P GF      G PPP
Sbjct: 441 -PGAY-GPPPTGFPP---VGAPPP 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,498,447
Number of Sequences: 27780
Number of extensions: 143977
Number of successful extensions: 294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3985757674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)