Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C11
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    29   1.1  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   4.5  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   4.5  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 733 FLNLSTCSCGDTLFGFLGSLLADTF*YTEMILLPSTLHIYTARY 602
           +LN S C   DT++G   S+ A T       L P   H YTA Y
Sbjct: 299 YLNPSDCKVIDTIYGHQRSITAAT-------LSPDATHFYTASY 335


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 349 FVYGLNRTEKLVSKTYKGDQSTVIV*SENDGPLFS 453
           +VY LN+ +  V ++Y GD S + + +   G LF+
Sbjct: 129 YVYMLNKQDGKVKRSYLGDSSLLDIDTSKGGDLFA 163


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 228 FISXVTSFRQAHTTQSPLEIVSIK*TSLVVICHSHSPRLLICLRL 362
           F   V +F +   T   LEI+ I  T    I   H   LL C+ L
Sbjct: 149 FAEMVKAFTKIENTSKRLEIIDIMGTYFFGILRDHPSDLLACVYL 193


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 730 LNLSTCSCGDTLFGFLGSLLADTF*YTEMILLPSTLHI 617
           +N+ +C     +F  L S+  +TF Y     LPS L +
Sbjct: 354 VNVKSCGSCAAVFASLASISVETFNYCSCNFLPSVLDL 391


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 743 LRYVFKSFHLLLWRHFIWVPWVPFSGHFL 657
           L Y F     L W  ++W+P+ P  G  L
Sbjct: 149 LEYEFNVCQSLKWDLYVWLPFRPLQGFLL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,377,716
Number of Sequences: 5004
Number of extensions: 72792
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)