Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C11
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -1

Query: 317 DYKTCLLNRDNFQG*LRSVGLTK*RHXRDKYYIGLIIKNPLNCFYHRLDSKNELSES 147
           +++T ++ +DN +  +    L    + R  +++ LI   PL+  +   +   + SES
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQDFSES 195


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -1

Query: 317 DYKTCLLNRDNFQG*LRSVGLTK*RHXRDKYYIGLIIKNPLNCFYHRLDSKNELSES 147
           +++T ++ +DN +  +    L    + R  +++ LI   PL+  +   +   + SES
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQDFSES 195


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -1

Query: 317 DYKTCLLNRDNFQG*LRSVGLTK*RHXRDKYYIGLIIKNPLNCFYHRLDSKNELSES 147
           +++T ++ +DN +  +    L    + R  +++ LI   PL+  +   +   + SES
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQDFSES 195


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 210 YQSDIIFISXVTSF---RQAHTTQSPLEIVSIK*TSLVVICHSHSPRLLICL 356
           Y + II+++ V  +     AH TQ     V+I  ++ V +   +SP++ I L
Sbjct: 713 YTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIIL 764


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 210 YQSDIIFISXVTSF---RQAHTTQSPLEIVSIK*TSLVVICHSHSPRLLICL 356
           Y + II+++ V  +     AH TQ     V+I  ++ V +   +SP++ I L
Sbjct: 803 YTTCIIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIIL 854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,283
Number of Sequences: 438
Number of extensions: 5125
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)