Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C09
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.91 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
 Frame = +2

Query: 488 GGGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGG-XGFXXXXGGXXXXPXX 664
           GGG GGF      PPP   G    G               GGG  GF    GG    P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 665 WG 670
           +G
Sbjct: 247 FG 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 524 PPPPXXXGXFFXGPXPXPPXKXPXPRXLGGG 616
           PPPP   G    GP P PP   P P    GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 560 PKKKXPXPXGGGXFXXGKNPPXPPPXRXKKKKXK 459
           P    P P   G     + PP PPP   KK+K K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 750 PXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPGXXPGKN 866
           P  PPP   P    PP       P G  KK     P ++
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,786,166
Number of Sequences: 5004
Number of extensions: 21159
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)