Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_C09
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 33 0.37
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.37
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.37
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 33 0.37
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.37
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.49
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.65
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 0.86
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.0
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.6
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 2.6
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 2.6
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.5
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.5
Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.0
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.0
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.0
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 6.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 8.0
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 8.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.0
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.0
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 28 8.0
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/77 (28%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Frame = -1
Query: 751 GKNPPXXPXLGFXPFX-GPXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGG 575
G PP P + P GP PP PP PPP GG
Sbjct: 745 GDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 574 XGXXXXKKXPXXPGGGG 524
G P PG GG
Sbjct: 805 GGGMYPPLIPTRPGPGG 821
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = -1
Query: 751 GKNPPXXPXLGFXPFXG-PXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGG 575
G PP P G P G P G PP PP PPP P F GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPP 580
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = -1
Query: 751 GKNPPXXPXLGFXPFXG-PXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGG 575
G PP P G P G P G PP PP PPP P F GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPP 580
PPPP G F GP P PP
Sbjct: 771 PPPPPPPGGFKGGPPPPPP 789
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/77 (28%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Frame = -1
Query: 751 GKNPPXXPXLGFXPFX-GPXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGG 575
G PP P + P GP PP PP PPP GG
Sbjct: 745 GDQPPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGG 804
Query: 574 XGXXXXKKXPXXPGGGG 524
G P PG GG
Sbjct: 805 GGGMYPPLIPTRPGPGG 821
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Frame = -1
Query: 751 GKNPPXXPXLGFXPFXG-PXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGG 575
G PP P G P G P G PP PP PPP P F GG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPP 580
PPPP G F GP P PP
Sbjct: 354 PPPPPPPGGFKGGPPPPPP 372
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Frame = +3
Query: 702 PXKGXKPKXGXXGGFFPXXPPPXXXPKKXXP---PXXXGGXTPRGXXKKXPGXXPGKNPX 872
P P+ GG P PPP P+ P P TP ++ P P P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
Query: 873 WGPLFXPXP 899
P P P
Sbjct: 182 NPPRTPPSP 190
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +2
Query: 491 GGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXG 622
GG GGF PPPP G + P PP P P G G
Sbjct: 428 GGPGGFG----PPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 0.86
Identities = 37/136 (27%), Positives = 38/136 (27%), Gaps = 2/136 (1%)
Frame = +3
Query: 480 PXXGGXGGVFXXXKXPPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXX 659
P GG G F PP G G F P PG +G GG
Sbjct: 146 PPSGGPPGPFDPSGAPPSGGPPGLF---DPSGAPPSGGPPGPFGPSGA--PPSGGPPGPF 200
Query: 660 KXGGXPXKKFXXKGP--XKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXX 833
P GP G P G G F P PP P P G P G
Sbjct: 201 NPSEAPPSG-GPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGP---PGPFDPSGAPPSG-G 255
Query: 834 KKXPGXXPGKNPXWGP 881
P G P GP
Sbjct: 256 PPGPFNPSGAPPSGGP 271
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 620 PXPPPKXGGXGFXXGXRXXXPKKKXPXPXGGGXFXXGKNPPXPPP 486
P PPP G P P P G G PP PPP
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 655
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 620 PXPPPKXGGXGFXXGXRXXXPKKKXPXPXGGGXFXXGKNPPXPPP 486
P PPP G P P P G G PP PPP
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPP 481
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/60 (33%), Positives = 21/60 (35%)
Frame = +3
Query: 702 PXKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPGXXPGKNPXWGP 881
P G P G G+ PPP PP GG PR PG P P GP
Sbjct: 1555 PMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPR-LGMPPPGPPP---PNGGP 1610
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Frame = +2
Query: 473 FFXXXGGGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXP---XPRXLGGGXGFXXXXGG 643
F GGG G PPPP G P P + P P GGG G GG
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGPSLPPLQLPRFELPRLSLPSFGGGGCGGPAPCGG 76
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 597 GXGXFXGGKGXGPXKKXPXXXGGGGFXXXXKPPXPPP 487
G G GG G G GGGG PP PPP
Sbjct: 80 GGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 32/137 (23%), Positives = 33/137 (24%)
Frame = +3
Query: 489 GGXGGVFXXXKXPPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXG 668
GG GG P PPG G P P PG G G
Sbjct: 92 GGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCP 151
Query: 669 GXPXKKFXXKGPXKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPG 848
G P GP P P P P P P G G +
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGA 211
Query: 849 XXPGKNPXWGPLFXPXP 899
G GP P P
Sbjct: 212 SEQGGPGEPGPAGPPGP 228
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 32/137 (23%), Positives = 33/137 (24%)
Frame = +3
Query: 489 GGXGGVFXXXKXPPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXG 668
GG GG P PPG G P P PG G G
Sbjct: 92 GGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCP 151
Query: 669 GXPXKKFXXKGPXKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPG 848
G P GP P P P P P P G G +
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGA 211
Query: 849 XXPGKNPXWGPLFXPXP 899
G GP P P
Sbjct: 212 SEQGGPGEPGPAGPPGP 228
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 32/137 (23%), Positives = 33/137 (24%)
Frame = +3
Query: 489 GGXGGVFXXXKXPPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXG 668
GG GG P PPG G P P PG G G
Sbjct: 92 GGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCP 151
Query: 669 GXPXKKFXXKGPXKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPG 848
G P GP P P P P P P G G +
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGA 211
Query: 849 XXPGKNPXWGPLFXPXP 899
G GP P P
Sbjct: 212 SEQGGPGEPGPAGPPGP 228
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.6
Identities = 32/137 (23%), Positives = 33/137 (24%)
Frame = +3
Query: 489 GGXGGVFXXXKXPPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXG 668
GG GG P PPG G P P PG G G
Sbjct: 92 GGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCP 151
Query: 669 GXPXKKFXXKGPXKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPG 848
G P GP P P P P P P G G +
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGA 211
Query: 849 XXPGKNPXWGPLFXPXP 899
G GP P P
Sbjct: 212 SEQGGPGEPGPAGPPGP 228
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/94 (23%), Positives = 23/94 (24%), Gaps = 2/94 (2%)
Frame = +3
Query: 570 PXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGPXKGXKPKXGXXGGFF 749
P PP P G G G + G P P G
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 297
Query: 750 PXXPPPXXXPK--KXXPPXXXGGXTPRGXXKKXP 845
P PPP P PP G P G P
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 614 PPPKXGGXGFXXGXRXXXPKKKXPXPXGGGXFXXGKNPPXPPPXRXKKK 468
PPP+ G R P P P GG PPP R K++
Sbjct: 290 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/114 (22%), Positives = 31/114 (27%)
Frame = +3
Query: 525 PPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGP 704
PPPP G PP G G + GG G P +
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 339
Query: 705 XKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPGXXPGKN 866
+ P G P PP P K PRG + P P K+
Sbjct: 340 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKS 393
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/94 (23%), Positives = 23/94 (24%), Gaps = 2/94 (2%)
Frame = +3
Query: 570 PXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGPXKGXKPKXGXXGGFF 749
P PP P G G G + G P P G
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 318
Query: 750 PXXPPPXXXPK--KXXPPXXXGGXTPRGXXKKXP 845
P PPP P PP G P G P
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 614 PPPKXGGXGFXXGXRXXXPKKKXPXPXGGGXFXXGKNPPXPPPXRXKKK 468
PPP+ G R P P P GG PPP R K++
Sbjct: 311 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/114 (22%), Positives = 31/114 (27%)
Frame = +3
Query: 525 PPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGP 704
PPPP G PP G G + GG G P +
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 360
Query: 705 XKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPGXXPGKN 866
+ P G P PP P K PRG + P P K+
Sbjct: 361 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKS 414
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/94 (23%), Positives = 23/94 (24%), Gaps = 2/94 (2%)
Frame = +3
Query: 570 PXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGPXKGXKPKXGXXGGFF 749
P PP P G G G + G P P G
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP 303
Query: 750 PXXPPPXXXPK--KXXPPXXXGGXTPRGXXKKXP 845
P PPP P PP G P G P
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 614 PPPKXGGXGFXXGXRXXXPKKKXPXPXGGGXFXXGKNPPXPPPXRXKKK 468
PPP+ G R P P P GG PPP R K++
Sbjct: 296 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Score = 29.1 bits (62), Expect = 4.6
Identities = 26/114 (22%), Positives = 31/114 (27%)
Frame = +3
Query: 525 PPPPGXXGFFFXXXXPXPPXKXXXPGFWGGGXVXXXXXGGXXXXXKXGGXPXKKFXXKGP 704
PPPP G PP G G + GG G P +
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQA 345
Query: 705 XKGXKPKXGXXGGFFPXXPPPXXXPKKXXPPXXXGGXTPRGXXKKXPGXXPGKN 866
+ P G P PP P K PRG + P P K+
Sbjct: 346 PERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKS 399
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +2
Query: 491 GGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXGG 643
GG GG PPPP P P P P GG GG
Sbjct: 31 GGGGGGGDAAPPPPPPADAAPAPAPAPEPEAAPAAPAADAGGYAAAASAGG 81
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/85 (25%), Positives = 24/85 (28%)
Frame = -1
Query: 742 PPXXPXLGFXPFXGPXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGGXGXX 563
PP P G P P + PP P PPP P G G
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-- 332
Query: 562 XXKKXPXXPGGGGXFXXXKTPPXPP 488
P P G + PP PP
Sbjct: 333 ----MPPPPPPGMRYPGGMPPPPPP 353
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPPXKXPXPRXLGG 613
PPPP G + P P PP + P P + G
Sbjct: 287 PPPPPSSG-MWPPPPPPPPGRTPGPPGMPG 315
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 476 FXXXGGGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXG 622
F GG GG PPPP G G P LGGG G
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGG 65
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/85 (25%), Positives = 24/85 (28%)
Frame = -1
Query: 742 PPXXPXLGFXPFXGPXXKNFFXGXPPXXXXXXXPPXXXXKTXPPPQXPGXXXFXGGXGXX 563
PP P G P P + PP P PPP P G G
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG-- 342
Query: 562 XXKKXPXXPGGGGXFXXXKTPPXPP 488
P P G + PP PP
Sbjct: 343 ----MPPPPPPGMRYPGGMPPPPPP 363
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPPXKXPXPRXLGG 613
PPPP G + P P PP + P P + G
Sbjct: 297 PPPPPSSG-MWPPPPPPPPGRTPGPPGMPG 325
>Z81592-1|CAB04725.1| 695|Caenorhabditis elegans Hypothetical
protein T16G1.1 protein.
Length = 695
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 615 PPPKXRGXGXFXGGKGXGPXKKXPXXXGGGGFXXXXKPPXPPP 487
PPP+ G G G K P G G PP PPP
Sbjct: 503 PPPRNNG-----NNNGNGRPMKPPSSSGSGSNRRSGPPPPPPP 540
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 524 PPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXGGXXXXP 658
PPPP G GP P PP P G G GG P
Sbjct: 538 PPPPPPVGMANGGPPPPPP--LPLDLLKGAVAGLKSVPGGPPPPP 580
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -2
Query: 597 GXGXFXGGKGXGPXKKXPXXXGGGGFXXXXKPPXPP 490
G G G G GP + P GGGG PP PP
Sbjct: 615 GGGPGGPGGGGGPPR-GPGGGGGGGPTGPPAPPKPP 649
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -2
Query: 597 GXGXFXGGKGXGPXKKXPXXXGGGGFXXXXKPPXPP 490
G G G G GP + P GGGG PP PP
Sbjct: 615 GGGPGGPGGGGGPPR-GPGGGGGGGPTGPPAPPKPP 649
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Frame = +2
Query: 470 FFFXXXGGGXGGFXXXKXPPPP---XXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXG 640
F F GGG GG PPPP G P PP G G G
Sbjct: 17 FLFPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYAAPAPSYGAPAGGAYPVG 76
Query: 641 G 643
G
Sbjct: 77 G 77
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -2
Query: 597 GXGXFXGGKGXGPXKKX--PXXXGGGGFXXXXKPPXPPP 487
G G + GG G G GGGG+ P PPP
Sbjct: 268 GGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 494 GXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXGG 643
G GG+ PPP P P PP P P GGG GG
Sbjct: 291 GGGGYSAPAAAPPP---------PPPPPPPPAPAPVSSGGGYSEQSSGGG 331
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = -2
Query: 597 GXGXFXGGKGXGPXKKX--PXXXGGGGFXXXXKPPXPPP 487
G G + GG G G GGGG+ P PPP
Sbjct: 268 GGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPP 306
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +2
Query: 494 GXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXGG 643
G GG+ PPP P P PP P P GGG GG
Sbjct: 291 GGGGYSAPAAAPPP---------PPPPPPPPAPAPVSSGGGYSEQSSGGG 331
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Frame = +2
Query: 470 FFFXXXGGGXGGFXXXKX-----PPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXG 622
F F GGG GG PPPP G P P PP P P G G G
Sbjct: 18 FLFPMAGGGGGGGGCAPAAPACAPPPPPMCG---CAPPPPPP---PPPPMCGCGCG 67
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 491 GGXGGFXXXKXPPPPXXXGXFFXGPXPXPP 580
G GG PPP G F P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 491 GGXGGFXXXKXPPPPXXXGXFFXGPXPXPP 580
G GG PPP G F P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +2
Query: 470 FFFXXXGGGXGGFXXXKXPPPPXXXGXFFXGPXPXPPXKXPXPRXLGGGXGFXXXXGG 643
F F GGG GG PPPP G G P P+ GG G+ GG
Sbjct: 16 FLFNLLGGGGGGCC---APPPPPPCGGGCGGGAPAAGGYAVAPQAPIGG-GYAQPGGG 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,391
Number of Sequences: 27780
Number of extensions: 259204
Number of successful extensions: 1332
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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