Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C08
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   2.7  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   3.5  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   8.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   8.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   8.1  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 715 FVLETSWSTSKG*NRPFINWIPYFPLFQDLFILSIIIQRCIKL 587
           F+ ETSW   +        W+  F +  + +IL +IIQR  +L
Sbjct: 523 FIYETSWHIER--------WLKVFSVQSEFYILKLIIQRLYQL 557


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +1

Query: 718 ENVDMQKYLKWSNDIEHRSKL-----FIKKXMSGGGFWEFISEMDKT 843
           EN D   Y  W N+   R KL        + +S G + +FI++  KT
Sbjct: 552 ENTDELFYFAWDNEKPMRKKLVSSFSIANRPISNGEYLDFINKKSKT 598


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 770  LCSISLLHFKYFCISTFSFCTGN*LEHQ*RLKQAIYQLDTLFSTVPRSFHSEHHNSKVHK 591
            LC  S + F Y  +ST   C    +     L + I  LDT+      SF  E+H + + K
Sbjct: 934  LCLTSRM-FSYIYVSTERMCQDVVISTTSILHKTIVNLDTIKGYSVLSFFRENHKNSLRK 992

Query: 590  T 588
            +
Sbjct: 993  S 993


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 524 AKSGNPFGPFWDTYNIDFNRSEFYAPLNYDAQNEKILEQWK-----IRYPVDKWPVLAFT 688
           A  G+ FGP W T+  + +      P ++ A+ E+++ QW      + Y  D  P+ AF+
Sbjct: 91  ASKGDTFGPSWATFWFEVH---IRLPKSW-AKYEQVIFQWNCDNEGLVYSQDGVPLQAFS 146

Query: 689 GA 694
           G+
Sbjct: 147 GS 148


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 287 KAVNRTLILPPWIEYRYGEPRSIQVPFDTYFNVDKLLEFANVITMEDFMREI 442
           K V   L+L P++E++      IQ+PF          EF  +   ED MR+I
Sbjct: 402 KGVPVLLVLMPYVEFKRHYLVDIQLPFAEDVRPYSFSEFEKLSNEED-MRQI 452


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 658 WIPYFPLFQDLFILSIIIQRCIKL*SVKVYIVSIPKGSKWITRFS 524
           W+PY     D  + S+++Q  + L   K+   SI   S W + F+
Sbjct: 511 WLPYLEKHADSLLQSVLVQFSLILSPWKIKNGSIDDFSVWRSAFA 555


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 554 WDTYNIDFNRSEFYAPLNYDAQNEKI 631
           W  Y IDFNR  FY   NY++    +
Sbjct: 252 WAPYLIDFNRIRFY---NYESSENSV 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,715
Number of Sequences: 5004
Number of extensions: 77838
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)