Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_C08
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865... 31 1.2
01_03_0182 + 13537522-13539699 30 2.1
10_08_0924 - 21602510-21603578,21603759-21604275,21604360-21604390 30 2.8
03_06_0230 - 32518749-32519143,32519301-32519589 29 4.9
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 29 6.5
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 29 6.5
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 28 8.5
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680... 28 8.5
>09_04_0496 +
18079905-18081586,18084825-18084868,18086396-18086502,
18087069-18087674,18087789-18088013,18088102-18088167,
18088268-18088336,18088511-18088582,18088672-18088848,
18089978-18090115
Length = 1061
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 124 KVPENDHSNFDGVINNYISCEKFKSRKKGLYCVLS 228
KVP + DGVI+ +IS +K S K+ +Y +LS
Sbjct: 448 KVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLS 482
>01_03_0182 + 13537522-13539699
Length = 725
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 364 WYLYGPRLTVPVFNPRWQN-*SSINCFTKSQNTQKVISLVPKSAHTWTVRNIA 209
WYL+ R+ P PRW N NC + S PK T+ +RNIA
Sbjct: 419 WYLFSSRIGWPENRPRWSNSMGQYNCVNRLVGISPPTSCTPK-IMTY-LRNIA 469
>10_08_0924 - 21602510-21603578,21603759-21604275,21604360-21604390
Length = 538
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 194 NPEKKG--YIAYCPCMGRFGNQADHFLGVLAFSKAVNRTLILPPWIEY 331
+PE +G ++ Y P G F NQ + +NRTL++PP +++
Sbjct: 102 SPELEGERFLWYAPHSG-FSNQVGELRNAAVAAALLNRTLVVPPVLDH 148
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 542 FGPFWDTYNIDFNRSEFYAPLNYDAQNEKILEQWKIRYP 658
FGP+ D ++ + R+EF + + +EQWKI +P
Sbjct: 178 FGPYCDGFD-EQQRAEFLLKFGHFHGIHEFVEQWKIDFP 215
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +2
Query: 332 RYGEPRSIQVPFDTYFNVDKLLEFANVITMEDFMREIAPTVWPIEKRVSFCYTQRTGEIQ 511
R GEP + P D + + L+ +IT + +A +P++K VS CY G
Sbjct: 341 REGEPSQL-APIDVFVSTVDPLKEPPLITANTVLSILAVD-YPVDK-VS-CYVSDDGSAM 396
Query: 512 NSCNAKS-----GNPFGPFWDTYNIDFNRSEFYAPLNYDAQNEKI 631
+ A S + PF +NI+ EFY D +KI
Sbjct: 397 LTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKI 441
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 580 VKVYIVSIPKGSKWITRFSITTV 512
+ V+I P SKWIT SITT+
Sbjct: 254 IGVFIAPRPNASKWITGLSITTL 276
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 227 PCMGRFGNQADHFLGVLAFSKAVNRTLILPPWIEYRYGEPRSIQVP 364
P F N DH L A S + + L+ +EY Y +P+ + P
Sbjct: 666 PTKTSFSN--DHLLTAAARSMSAQKELLAEAAVEYGYADPKEVTEP 709
>04_03_0497 +
16566601-16566696,16567026-16567102,16567903-16568047,
16568265-16568309,16568338-16569294,16569603-16569896,
16571129-16571242,16571826-16571913,16571995-16572050,
16572250-16572304,16572417-16572460
Length = 656
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 488 TQRTGEIQNSCNAKSGNPFGPFWDTYNIDFNRSEFYAPLNYDAQNEKILEQWKIRYPVDK 667
T T I + K F W++YN+ +S Y ++ D + + LE+++I +DK
Sbjct: 112 TSVTALIHDMVCEKFMTGFPCLWESYNLGSQQSCSYTSISRDGRTKFYLERFQIGNFIDK 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,756,629
Number of Sequences: 37544
Number of extensions: 429031
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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