Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C07
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    28   1.5  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   6.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   7.9  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 1   TXLPXPSHYREFLKILVKQTYLQNIKYSVKYFYKS 105
           T +P P+ Y EF KIL    Y     Y +KY  KS
Sbjct: 180 TQIPLPAEYEEFYKILC--IYFPK-NYDIKYIMKS 211


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 50  SNRHTSKILNIQLSTFISRHKSNCDC*LKFNY 145
           + R T +++  +    +S+HK+ C+  L F Y
Sbjct: 10  ATRQTDEVIQQKYDESLSKHKNRCELSLTFEY 41


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 144 IKDDILDKFKAKVDKVLNEYLLFELIAFRSAD 239
           IKD I D  +  +DK  N  L ++L+ F +A+
Sbjct: 193 IKDGIEDYRRCVLDKKFNNTLTWKLVGFNNAN 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,316
Number of Sequences: 5004
Number of extensions: 46724
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)