Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C06
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 791 PPPXKKXPGXPPXKXPXPLFXXPPXKKKKXGXXPPXKRGXVSK 919
           PPP    PG  P   P P    PP   KK     P + G + K
Sbjct: 9   PPPPPPPPGFEPPSQPPP--PPPPGYVKKRKNKTPAQSGNLEK 49


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
 Frame = +2

Query: 653 QKKXXXPPPKIXXNKKKXGGGEXXKXXXXXXXXXXXXXXXXXRXPXPPPXKKXPGXPPXK 832
           +K+   PPP    N+ K   G                       P PP  +  P  PP +
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 833 -XPXPLFXXPPXKKKKXGXXPP 895
             P      PP    +    PP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPP 389


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -2

Query: 925 GGFGNXXPFXGGXPPXFFFFXGGXXKKGPGXFXGGXPRXFFXGGGXG 785
           GGFG      GG PP    F G     G G   GG     F GG  G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG--HGGFGGGPGG 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.145    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,807
Number of Sequences: 5004
Number of extensions: 16425
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)