Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C04
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    28   1.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   2.0  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   8.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   8.2  

>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/114 (21%), Positives = 49/114 (42%)
 Frame = +3

Query: 171 FKMKMDFHAGQTKPMKIEEYNAIVEDFTKLSSFTRKMENELKRKYCHIQPHTLGSIISLL 350
           FKM  D    QT   + E     VED  KL   + K +  + R +C +      + ++  
Sbjct: 315 FKMVCDESKAQTVDWEFEGQKCSVEDLPKLVQLSPKRDLYILRVFC-LAEQLADAALNTN 373

Query: 351 IQRSMKQNYRKSPAISSKYQELYEVAMRDDTKENVILKLSESQGISPALFARSL 512
           I+       R+S ++    +E + +        +VI KL +S+ +   + ++++
Sbjct: 374 IENMYNPTERRSESVELLKRESFLLKKVLLYLRDVISKLLKSKVVVEFIHSQTI 427


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 844  SPNKALLSTXLITKPSTAMGTSNLKSGVLSYPLERSTFSS 725
            S    L ST  I   STA   S++ S + SY L  S FSS
Sbjct: 3604 SQGSVLSSTRAIESESTASHRSSVLSELSSYDLSTSAFSS 3643


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +3

Query: 216 KIEEYNAIVEDFTKLSSFTRKMENELKRKYC---HIQPHTLGSIISLLIQRSMKQNYRKS 386
           K  E  A  E  + LS+FT       K  YC   H Q    GSI   +I  SM      S
Sbjct: 45  KAVEERAETESSSNLSNFTTSESESSKPAYCFNSHSQNMAEGSISIPVISHSMNVENEVS 104

Query: 387 PA 392
            A
Sbjct: 105 TA 106


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 444 WYHLS*QLHKALDI*MILQG 385
           W HLS  +H+ +D+   LQG
Sbjct: 70  WVHLSPSVHRCIDVVAFLQG 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,548
Number of Sequences: 5004
Number of extensions: 59369
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)