Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_C04
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    29   3.4  
AL132904-19|CAD91707.1|  371|Caenorhabditis elegans Hypothetical...    29   3.4  
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi...    29   5.9  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    28   7.8  

>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174 KMKMDFHAGQTKPMKIEEYNAIV-EDFTKLSSFTRKMENELKRKYCHIQP 320
           +M  D+HAG+ +P   +EY AI+ + +  L+     M N+ K +   + P
Sbjct: 77  QMVNDYHAGKFEPKNYDEYIAIMKKSYPALAGPYETMYNKYKEQVAKLGP 126


>AL132904-19|CAD91707.1|  371|Caenorhabditis elegans Hypothetical
           protein Y111B2A.26 protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
 Frame = +3

Query: 192 HAGQTKPM-KIEEYNAIVEDF-TKLSSFTRKMENELKRKYCHIQPHTLGSIISLLIQRSM 365
           H  + K + ++ E+  IVE+  T+ +    + E EL+ +   ++  T G  +      S 
Sbjct: 33  HEKKVKELQRLREHLMIVEETSTREAVEAEQRETELRARVRELE--TKGHQVEEGASEST 90

Query: 366 KQNYRKSPAISSKYQELYEVAMRDDTKENVILKLSESQGISPALFARSLLQGVFSDSTIS 545
           +Q   +  +++S+ + L       + K+    ++S  Q    AL +   LQ V  + +I 
Sbjct: 91  QQYQVQIASLTSQVESLQNKTT--EWKKKFETEVSARQQTQEALTS---LQNVVRELSID 145

Query: 546 KKYIKDTTLIDNKDLAYQVFMGIMNDNQYGPYADVTKQSIG 668
            +  KD+    +++L  Q  +G +N+       D+ +QS+G
Sbjct: 146 HE--KDSAFASHRNLELQTMIGTLNEEIAQIREDLDRQSLG 184


>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
           nonsense-mediated mRNA decay trans-acting factor
           protein.
          Length = 1069

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 312 IQPHTLGSIISLLIQRSMKQNYRKSP-AISSKYQELYEVAMRD 437
           +QPH +G I S   QRS   NY  +   ++SK  E  E+A  D
Sbjct: 759 VQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYENVEIASVD 801


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 267 FTRKMENELKRKYCHIQPHTLGSIISLLIQRSMKQNYRKSPAISSKYQELYEVAMRDDTK 446
           F R   N +    C I  + L  +++  ++   K  Y K+ AI S     Y +  R    
Sbjct: 158 FLRNASNTIYVVICLISLNALALVVTGYLKHYNKVQYNKNHAILSSVITTYSLTQRYQIT 217

Query: 447 ENV-ILKL 467
           EN+ IL++
Sbjct: 218 ENIRILRM 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,923,351
Number of Sequences: 27780
Number of extensions: 312286
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)