Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_B24
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.6
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.9
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 4.9
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 6.4
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 26 8.5
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch... 26 8.5
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 26 8.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 8.5
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.5
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.6
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Frame = +2
Query: 530 LRTVMNGKMS-YLVAISLXAPVSLFKHAPLHEMWDNTFEGMK-VEVKNTDCDNYSEKLSD 703
LRT+ + +M+ Y+ ++ L A + F + E N M+ + T C S S
Sbjct: 110 LRTIKSPRMTGYITSLCLSAILKFFSFRIISEESPNLALSMRNLSFAITQCRFESFDASQ 169
Query: 704 YFWVATVLKVKGYMG-LLRYEGFG--SDDS----KDFGVNLCCQKSSSWLVCYTRQTLIP 862
A +L+V M LLR G SDDS + G+++CCQ S ++ Y+ + +
Sbjct: 170 D--EAVLLRVSRLMEELLRGPGKAVLSDDSICEIVETGLSMCCQSRLSQVLRYSAELSMT 227
Query: 863 HEL*KIXX*LEKXLVK 910
L KI L+ VK
Sbjct: 228 SILEKIFERLKYIDVK 243
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1
Query: 259 GIIDVSSKIFSSIVL*QLSSCSKLL 185
GIID++S++ SSI + L SC+ L+
Sbjct: 129 GIIDIASELHSSIPVSTLGSCTFLV 153
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 447 QWNHPCHVICTLH*FESPINVFSSRKT 367
+WN P HV H + S I+ F +K+
Sbjct: 434 EWNKPVHVFLMRHVYHSSISGFKLKKS 460
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 483 SGMPLLELG*RLQWNHPCHVICTLH*FESPINVFSSRKTSVATK*TKFII 334
+GM L+LG + H C +C FE + +FSS + A K II
Sbjct: 416 TGMRTLDLGNPMLSMHSCREMCGSKDFEYAVVLFSSFFQNFANLEEKIII 465
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 551 KMSYLVAISLXAPVSLFKHAPLHEMWDNTFE 643
K ++L+AIS+ V FKH PL W T E
Sbjct: 156 KYAHLLAISIVVIVCYFKHLPLLP-WTFTVE 185
>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +2
Query: 620 EMWDNTFEGMKVEVKNTDCDNYSEKLSDYFWVATVLKVKGYMGLLRYEGF 769
E WD E E + D Y ++ Y+ +AT L G+ + F
Sbjct: 50 EFWDRNHENESEEDRARRIDGYKSVVNSYYDLATDLYEYGWSQSFHFSRF 99
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 656 EVKNTDCDNY---SEKLSDYFWVATV 724
+VKN CDNY +EKL++ F +A V
Sbjct: 69 QVKNWVCDNYINYTEKLTEIFSMANV 94
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 382 KHINWRFKLMEGTDHMAGMIPLEPLPQLQQWHATLSDLQAGPIKQSAASVANSY 543
+HI W + G HMAG L H + GP +++AAS+ N Y
Sbjct: 583 EHIYW---INGGDIHMAGQFSYLSNSLLLNVHRYVESHLNGPTERTAASLTNWY 633
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 369 FFETKTH*LEIQTNGGYRSHGRDDSTGAFTPTPAMACHF 485
F + + L+++ G+ SHGRD S + T +P HF
Sbjct: 379 FMDDYVNELQLEIVPGF-SHGRDSSDTSCTESPPEPSHF 416
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,600
Number of Sequences: 5004
Number of extensions: 78589
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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