Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B24
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    28   0.13 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 364 RCNEVNKIYYSLDRTALGVQHDHTIRILRNYPSXKGIIDVSSKIFSSI 221
           RC   NKI  SL R    +Q+ HT       PS + I ++  +++SS+
Sbjct: 4   RCEPCNKILTSLTRLRRHIQNVHT------RPSKEPICNICKRVYSSL 45


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 712 PKVITKFFRIIITVCILHFNL 650
           P  I K+ RI+  VC + FNL
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 712 PKVITKFFRIIITVCILHFNL 650
           P  I K+ RI+  VC + FNL
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNL 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 712 PKVITKFFRIIITVCILHFNL 650
           P  I K+ RI+  VC + FNL
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNL 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,359
Number of Sequences: 438
Number of extensions: 5241
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)