Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B23
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72342-1|AAC51111.1|  410|Homo sapiens platelet activating facto...    30   9.7  
L13386-1|AAA02881.1|  410|Homo sapiens Miller-Dieker lissencepha...    30   9.7  
L13385-1|AAA02880.1|  410|Homo sapiens Miller-Dieker lissencepha...    30   9.7  
BX538346-1|CAD98141.1|  147|Homo sapiens hypothetical protein pr...    30   9.7  
BC064638-1|AAH64638.1|  410|Homo sapiens platelet-activating fac...    30   9.7  
AF400434-1|AAK92483.1|  410|Homo sapiens platelet-activating fac...    30   9.7  
AF208838-1|AAL34973.1|  410|Homo sapiens Miller-Dieker lissencep...    30   9.7  
AF208837-1|AAL34972.1|  410|Homo sapiens Miller-Dieker lissencep...    30   9.7  

>U72342-1|AAC51111.1|  410|Homo sapiens platelet activating factor
           acetylhydrolase, brain isoform, 45 kDa subunit protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>L13386-1|AAA02881.1|  410|Homo sapiens Miller-Dieker lissencephaly
           protein protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>L13385-1|AAA02880.1|  410|Homo sapiens Miller-Dieker lissencephaly
           protein protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>BX538346-1|CAD98141.1|  147|Homo sapiens hypothetical protein
           protein.
          Length = 147

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 47  EKYALSGHRSPVTRVIFHPVFSVMVS 72


>BC064638-1|AAH64638.1|  410|Homo sapiens platelet-activating factor
           acetylhydrolase, isoform Ib, alpha subunit 45kDa
           protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>AF400434-1|AAK92483.1|  410|Homo sapiens platelet-activating factor
           acetyl hydrolase isoform Ib alpha subunit protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>AF208838-1|AAL34973.1|  410|Homo sapiens Miller-Dieker
           lissencephaly protein protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


>AF208837-1|AAL34972.1|  410|Homo sapiens Miller-Dieker
           lissencephaly protein protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 9.7
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 246 EKVSVNGHR--LTEIIFHPILSHLIS 317
           EK +++GHR  +T +IFHP+ S ++S
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVS 125


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,453,931
Number of Sequences: 237096
Number of extensions: 2094533
Number of successful extensions: 2380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)