Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B22
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0314 - 24328019-24328144,24329027-24329062,24329780-243298...   154   1e-37
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582...   147   9e-36
12_01_0261 - 1917149-1917274,1917809-1917922,1918155-1918331,191...   101   8e-22
11_01_0263 - 1998399-1998524,1999055-1999168,1999400-1999576,200...   101   8e-22
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    30   2.8  
08_02_0636 + 19567654-19568859                                         29   5.0  
03_02_0301 + 7252434-7252591,7253005-7253075,7253553-7253671,725...    28   8.7  

>04_04_0314 -
           24328019-24328144,24329027-24329062,24329780-24329893,
           24329997-24330176,24330313-24330510
          Length = 217

 Score =  154 bits (373), Expect = 1e-37
 Identities = 76/174 (43%), Positives = 117/174 (67%), Gaps = 1/174 (0%)
 Frame = +2

Query: 110 MDDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 289
           M  + ET +L+RIR+TVMQ+  DRGYLVT+ ++D     F  +FGD      P   D +V
Sbjct: 1   MASEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGD------PVDRDHLV 54

Query: 290 LVAHN-DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 466
              H  D+  DQ++VFFP +AK G+KTI++Y  RM++E++   I+VVQ  +S  A+ ++ 
Sbjct: 55  FSRHKKDNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQ 114

Query: 467 DMAPKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRI 628
           +++ K+ LE F E+ELL+NI +H LVPEH +LTP++K+ LL RY +KE  ++ +
Sbjct: 115 EVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQILSL 168



 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 30/31 (96%)
 Frame = +3

Query: 645 LARYFGLKRGQVVKIIRSSETAGRYISYRLV 737
           +ARY+G+KRGQVVKIIR+SETAGRY++YR V
Sbjct: 186 IARYYGMKRGQVVKIIRASETAGRYVTYRYV 216


>01_06_1059 -
           34156139-34156238,34157113-34157189,34158146-34158259,
           34158390-34158569,34159312-34159524
          Length = 227

 Score =  147 bits (357), Expect = 9e-36
 Identities = 75/162 (46%), Positives = 106/162 (65%)
 Frame = +2

Query: 134 KLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHNDDP 313
           +L RIR+TVMQ+  DRGYLV + EL      F  ++G+        R DL++     +DP
Sbjct: 14  RLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFH-----REDLLINKYKKNDP 68

Query: 314 TDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYILE 493
           +DQ++VFFP++ K+G+K IK Y   M+ EN+ RA++V+Q  ++P A+  L ++ PK  LE
Sbjct: 69  SDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLE 128

Query: 494 QFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENML 619
            F E+ELLINI EH LVPEH VL  +EK+ LL RY LKE  +
Sbjct: 129 IFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQV 170


>12_01_0261 -
           1917149-1917274,1917809-1917922,1918155-1918331,
           1919075-1919341
          Length = 227

 Score =  101 bits (242), Expect = 8e-22
 Identities = 53/174 (30%), Positives = 107/174 (61%)
 Frame = +2

Query: 125 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 304
           E+++L+  R+T M++  DRGY V + E+ +TL +F+  + +KP  +R A +  +V     
Sbjct: 29  ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 83

Query: 305 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 484
            DP+ ++ + F     + I TI+    + +EEN+ R ++++Q+ +   A++++ ++  K+
Sbjct: 84  SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 142

Query: 485 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPV 646
            ++ F  ++LL+NIT+H L P+H VL+ D+K +LL  Y ++++ L R+   D V
Sbjct: 143 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 645 LARYFGLKRGQVVKIIRSSETAGRYISYRLV 737
           +ARY+G  +G VVK+    E  G+ ++YR V
Sbjct: 196 VARYYGFDKGTVVKVTYDGELTGKRVAYRCV 226


>11_01_0263 -
           1998399-1998524,1999055-1999168,1999400-1999576,
           2000321-2000587
          Length = 227

 Score =  101 bits (242), Expect = 8e-22
 Identities = 53/174 (30%), Positives = 107/174 (61%)
 Frame = +2

Query: 125 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 304
           E+++L+  R+T M++  DRGY V + E+ +TL +F+  + +KP  +R A +  +V     
Sbjct: 29  ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLV----- 83

Query: 305 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 484
            DP+ ++ + F     + I TI+    + +EEN+ R ++++Q+ +   A++++ ++  K+
Sbjct: 84  SDPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KF 142

Query: 485 ILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPV 646
            ++ F  ++LL+NIT+H L P+H VL+ D+K +LL  Y ++++ L R+   D V
Sbjct: 143 KVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAV 196



 Score = 35.9 bits (79), Expect = 0.043
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 645 LARYFGLKRGQVVKIIRSSETAGRYISYRLV 737
           +ARY+G  +G VVK+I   E  G+ ++YR V
Sbjct: 196 VARYYGFDKGTVVKVIYDGELTGKRVAYRCV 226


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
 Frame = +2

Query: 470 MAPKYILEQFLESELLINITEH-ELVPEHIVLTPDEKQELLARY-KLK--ENMLMRIQAG 637
           + P Y++++FL+++ + N+T + E + +  + + D    LL  Y KLK  E +   I+  
Sbjct: 395 LEPSYVIQKFLDAKRIYNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDE 454

Query: 638 DPVGEI 655
           D VGEI
Sbjct: 455 DGVGEI 460


>08_02_0636 + 19567654-19568859
          Length = 401

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = -2

Query: 338 ERKQTSDPLDHHYEPLTQSNHFLLVFSHLVYRQTAL*IVLKFGPIHLA*LNILGHGTTAL 159
           + ++  D +  + EP T S    +  SH++Y  TA  ++  F P     + +   GT  +
Sbjct: 65  DSQKVFDEMPSNKEPTTASV-LHVTMSHVLYPVTAEVLLQVFSPYGAEEVRVYNQGTIQV 123

Query: 158 QFYVYARVCK 129
           + ++  R+C+
Sbjct: 124 EAFILFRLCQ 133


>03_02_0301 +
           7252434-7252591,7253005-7253075,7253553-7253671,
           7254106-7254225
          Length = 155

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 692 YDLHHLSSFKSKVSRQQGHLLVFSSTCSLSAYILPRVLAFHPV 564
           Y    L S K+K+SR   + ++FS    L   + PR+LA H +
Sbjct: 5   YSADLLQSEKTKLSRN--NKVIFSKNSHLQEVLAPRMLALHQI 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,936,724
Number of Sequences: 37544
Number of extensions: 418329
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)