Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B20
         (1252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   3.0  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 27/101 (26%), Positives = 32/101 (31%)
 Frame = -2

Query: 789 PSPXLTHSRPPDGXXRXPAAGGTXDRAXRXPXVRAXGTXPPXGGFTXXRXXAXXPRXGXT 610
           P P      PP G    P AGG+       P     G+ PP       R     P     
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGS-------PPPAGTGSPPP-----PPRQKRQAPERSPP 345

Query: 609 TXRAPLXSXP*ARVXXGPPXESAXXXXGAXXGPHRTXXGRP 487
           T   P  S P  R   G P +S+     +  GP     G P
Sbjct: 346 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGP 386


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 27/101 (26%), Positives = 32/101 (31%)
 Frame = -2

Query: 789 PSPXLTHSRPPDGXXRXPAAGGTXDRAXRXPXVRAXGTXPPXGGFTXXRXXAXXPRXGXT 610
           P P      PP G    P AGG+       P     G+ PP       R     P     
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGS-------PPPAGTGSPPP-----PPRQKRQAPERSPP 366

Query: 609 TXRAPLXSXP*ARVXXGPPXESAXXXXGAXXGPHRTXXGRP 487
           T   P  S P  R   G P +S+     +  GP     G P
Sbjct: 367 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGP 407


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 27/101 (26%), Positives = 32/101 (31%)
 Frame = -2

Query: 789 PSPXLTHSRPPDGXXRXPAAGGTXDRAXRXPXVRAXGTXPPXGGFTXXRXXAXXPRXGXT 610
           P P      PP G    P AGG+       P     G+ PP       R     P     
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGS-------PPPAGTGSPPP-----PPRQKRQAPERSPP 351

Query: 609 TXRAPLXSXP*ARVXXGPPXESAXXXXGAXXGPHRTXXGRP 487
           T   P  S P  R   G P +S+     +  GP     G P
Sbjct: 352 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGP 392


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 871  GGPPXRAGQHPPSAAPTIXGXRPPA 797
            GGPP R G  PP   P   G  PP+
Sbjct: 1590 GGPPPRLGMPPPGPPPPNGGPPPPS 1614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,837
Number of Sequences: 27780
Number of extensions: 160794
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)