Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_B17
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 41 3e-04
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 38 0.003
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 35 0.013
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 34 0.031
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 33 0.054
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 33 0.054
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 32 0.094
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 32 0.094
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.12
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 29 0.67
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 29 0.88
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 28 1.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 28 1.5
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 28 1.5
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 28 2.0
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 28 2.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 2.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.6
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 4.7
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 4.7
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 4.7
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 4.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 4.7
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 4.7
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 6.2
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 26 6.2
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 6.2
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.2
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 8.2
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 8.2
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 8.2
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 8.2
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH PV +VA++PDG T+A G++I+ ++ +++ + FS + + +
Sbjct: 503 GHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSRESTVL 562
Query: 703 ATGGHTGKVTVYGI 744
+GG V + +
Sbjct: 563 VSGGSDCTVRAWDV 576
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/99 (25%), Positives = 41/99 (41%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GHE + S+ S DG+T+ G++ + TD + ++FSPDG +
Sbjct: 374 GHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDG-VTTVMFSPDGQFI 432
Query: 703 ATGGHTGKVTVYGISMELWIKC*IRXESYYVCCLXPXGR 819
A G + ++ S L + ES Y P G+
Sbjct: 433 AAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSPDGK 471
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 327 TIHSILLKKENAHEDLIYGCAWANINHSTDSKGPSKDYIVTGGLDNLVKVWSYE 488
T L+++ + HE+ +Y A++ P Y+V+G LDN +K+W +
Sbjct: 445 TSSGTLVEQLHGHEESVYSVAFS----------PDGKYLVSGSLDNTIKLWELQ 488
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 538 VVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVATG 711
V +V SPDG+ IA G + ++ ++ + FSPDG + +G
Sbjct: 420 VTTVMFSPDGQFIAAGSLDKVIRIWTSS-GTLVEQLHGHEESVYSVAFSPDGKYLVSG 476
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH+ ++SV VSPDG+ I +Q ++ + + SP+G
Sbjct: 510 GHKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSPNGHCF 569
Query: 703 ATG 711
ATG
Sbjct: 570 ATG 572
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 526 HEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSS----DMW--KIVFSP 687
H + V S DG+ +A G+ I +Q +SS D++ + FSP
Sbjct: 286 HTSVICYVRFSADGKFLATGCNRAAMVFNVET-GKLITLLQEESSKREGDLYVRSVAFSP 344
Query: 688 DGSQVATGGHTGKVTVYGISME 753
DG +ATG ++ ++ I+ +
Sbjct: 345 DGKYLATGVEDQQIRIWDIAQK 366
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 520 KGHEMPVVSVAVSPDGETIA 579
+GH V+SVAVSP+G A
Sbjct: 551 QGHNNSVISVAVSPNGHCFA 570
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 35.1 bits (77), Expect = 0.013
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH V+SVAVSPD GQ Q + + + FSPDG Q
Sbjct: 536 GHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQF 595
Query: 703 ATGGHTGKVTVYGI 744
A+G + ++ I
Sbjct: 596 ASGSGDLRARIWSI 609
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 508 YTPSKGHEMPVVSVAVSPDGETIA 579
Y +GH+ V+SV SPDG A
Sbjct: 573 YLTCQGHKNSVISVCFSPDGRQFA 596
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH PV SVA SP +A G ++ +++ ++ ++ + F+P G +
Sbjct: 185 GHTSPVRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQVGQLRGHAAWIFAVAFNPVGDLL 244
Query: 703 ATGGHTGKVTVYGI 744
+ GK+ ++ I
Sbjct: 245 LSADVEGKIKIWDI 258
Score = 33.1 bits (72), Expect = 0.054
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 526 HEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVA 705
H S +SPDG+TIA KI E+ T I +SP+G +
Sbjct: 102 HPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISELDTKGKFGLCIDYSPNGRFIV 161
Query: 706 TGGHTGKV 729
+G TG++
Sbjct: 162 SGHQTGQL 169
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/63 (20%), Positives = 25/63 (39%)
Frame = +1
Query: 556 SPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTV 735
SP+G I G+ + +S + + FSP + +A G + +T+
Sbjct: 154 SPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSPGSTLLAAAGDSKMITI 213
Query: 736 YGI 744
Y +
Sbjct: 214 YDV 216
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 33.1 bits (72), Expect = 0.054
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 399 INHSTDSKGPSKDYIVTGGLDNLVKVWSYE 488
+N+ K Y++T G DNL+KVW Y+
Sbjct: 187 VNYVNYYPAGDKPYLITAGDDNLIKVWDYQ 216
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 33.1 bits (72), Expect = 0.054
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GHE PV S++ + G +A I E SD+ + F PDG +V
Sbjct: 465 GHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKEV 524
Query: 703 ATGGHTGKVTVYGI 744
G++T + +
Sbjct: 525 CVASLDGQLTFWNV 538
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 32.3 bits (70), Expect = 0.094
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH PV V++SP E I I + ++ +W + FSP G
Sbjct: 401 GHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYF 460
Query: 703 ATGGH 717
AT H
Sbjct: 461 ATASH 465
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 32.3 bits (70), Expect = 0.094
Identities = 16/78 (20%), Positives = 32/78 (41%)
Frame = +1
Query: 520 KGHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQ 699
K H+ V ++ VS DG IA G+ + ++ +W F+P Q
Sbjct: 462 KAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQ 521
Query: 700 VATGGHTGKVTVYGISME 753
+A+G + ++ + +
Sbjct: 522 LASGSGDRTIRIWNVDTQ 539
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVW 479
P+ + TGG + LVKVW
Sbjct: 113 PTNTLLATGGAEGLVKVW 130
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/75 (21%), Positives = 31/75 (41%)
Frame = +1
Query: 520 KGHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQ 699
+GH + S+A PDG ++ G+ I + + + +SP+G Q
Sbjct: 304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQ 363
Query: 700 VATGGHTGKVTVYGI 744
+AT V ++ +
Sbjct: 364 LATSSADDTVKIWDL 378
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 29.5 bits (63), Expect = 0.67
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 399 INHSTDSKGPSKDYIVTGGLDNLVKVWSYENN 494
I H + P + YIV+G D+ ++VW N
Sbjct: 446 IRHGVEIVEPDQPYIVSGSRDHTLRVWKLPKN 477
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 423 GPSKDYIVTGGLDNLVKVWSYE 488
GP K + T G DNLVK+W+++
Sbjct: 170 GPKK--LATAGCDNLVKIWAFD 189
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 441 IVTGGLDNLVKVWSYENNKLELLHTL 518
+ T D +KV+S ENN+ LL TL
Sbjct: 24 LATCSSDQTIKVFSIENNQQTLLETL 49
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +1
Query: 640 EIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVY 738
++Q ++ +W + FSP+G+ +A+ + G V ++
Sbjct: 462 QLQGHTNTVWALAFSPNGNTLASADNDGNVFLW 494
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYENNKL 500
P++ V+GG D V VW+Y++ KL
Sbjct: 63 PTQPLFVSGGDDYKVNVWNYKSRKL 87
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYENNKLE 503
PS+D IV+ LD V+VW +++
Sbjct: 147 PSEDLIVSASLDQTVRVWDISGLRMK 172
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 438 YIVTGGLDNLVKVWSYENN 494
++ TG DN VKVW E N
Sbjct: 313 FLYTGAFDNAVKVWDMEGN 331
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYENN 494
P + VTGG D +VKVW N
Sbjct: 556 PKGNLFVTGGSDGIVKVWDLRLN 578
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 228 ILCVNYLILFVADNNLPIASLRAI*TYLKMPSNTIHSILLKKENAHEDLIYG 383
+L N + F +N +PIA +A + K + H ILL+ +D I G
Sbjct: 471 LLKTNGIEYFGQENTVPIAMDKASKIFYKFGQSQWHQILLEAPTKDQDFISG 522
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 631 KIREIQTDSSDMWKIVFSPDGSQVATGGHTGKVTVY 738
++ + + ++ + + +SPDG +A G +GKV +Y
Sbjct: 471 EVAQCKDSTAPITCLAYSPDGKYLACGDASGKVVLY 506
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYE 488
P I TGGLD +++WS E
Sbjct: 28 PDGSRIATGGLDGTIRIWSTE 48
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 664 MWKIVFSPDGSQVATGGHTGKVTVY 738
++ I PDGS++ATGG G + ++
Sbjct: 21 IFSIHIHPDGSRIATGGLDGTIRIW 45
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +3
Query: 405 HSTDSKGPSKDYIVTGGLDNLVKVWSYENN 494
H D Y++T D L+K+W Y+ +
Sbjct: 138 HKLDISSFHPSYVLTASQDGLIKLWDYKES 167
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 354 ENAHEDLIYGCAWANINHSTDSKGPSKDYIVTGGLDNLVKVWS---YENNKLE 503
EN+ E+++ C + N S+ K+ +TG D ++++W N KLE
Sbjct: 2428 ENSDENILCSCFYTGAN----SEWLHKNLFITGHPDGIIRIWEKRLQSNAKLE 2476
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 315 MPSNTIHSILLKKENAHEDLIY 380
+PS++ H +L+++ N H DL Y
Sbjct: 1250 VPSSSHHDVLMEENNVHLDLTY 1271
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYENNKLELLHTL 518
PS+ ++ G D +++W+ E+ ELL TL
Sbjct: 627 PSRQQCISAGTDAKIRIWNLESG--ELLQTL 655
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETIAXXXXXXXXXXXXXXXGQKIREIQTDSSDMWKIVFSPDGSQV 702
GH++PV+S+ +S D + + G + I + ++ F PD
Sbjct: 574 GHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQPDTYNF 633
Query: 703 ATGGHTGKVTVY-GISMELWIK 765
T +V + G S +L +K
Sbjct: 634 FTCSKDREVRYWDGKSFDLILK 655
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 417 SKGPSKDYIVTGGLDNLVKVWSYENNKLE 503
S P+K +I T D +K+WS +LE
Sbjct: 61 SVSPNKRWIATSSSDGTIKIWSALTFRLE 89
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVWSYENNKL 500
P Y+ + G D +VK W E NK+
Sbjct: 215 PRHPYLFSCGEDKMVKCWDLETNKV 239
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 438 YIVTGGLDNLVKVWSYENNK 497
Y+VT G D+L+KVW K
Sbjct: 279 YMVTAGADSLLKVWDLRTYK 298
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 426 PSKDYIVTGGLDNLVKVW 479
PSK + +G DNLVK W
Sbjct: 216 PSKGLLASGSKDNLVKFW 233
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 234 CVNYLILFVADNNLPIASLRAI*TYLKMPSNTIHSILLKKENA 362
CVN L+ + A+ ++P R YL HS+L NA
Sbjct: 384 CVNSLLSYNANPSIPNRQRRTASEYLLEADKKPHSLLQSNSNA 426
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 683 ENTIFHISELSVCISRIFCPSKRSHMISEESRDVLAIVSPSGLTATDTTGISCP 522
ENT + I E S R+F P ++ S E + I ++ TGI+ P
Sbjct: 107 ENT-YQIREESTSSVRVFLPDEQGSYTSNEIKTGYVITETPKISQNIDTGITIP 159
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 6.2
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = +1
Query: 523 GHEMPVVSVAVSPDGETI 576
GH+ P++ +A++PDG+ +
Sbjct: 366 GHQEPILCMAITPDGKRV 383
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 432 KDYIVTGGLDNLVKVWSY--ENNKLELL 509
KDY+ T L + V V+ Y ENN L L+
Sbjct: 932 KDYVYTSSLRDSVAVFQYDSENNSLNLV 959
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 363 EHSPFLTILNVLYLTAFLDMFK*LVMKLLVNYCRQQIKL 247
EH F + N+L + LD+ + KL Y ++Q+K+
Sbjct: 260 EHCDFKQLRNILIRSCMLDLIQTTEEKLYEQYRQEQMKV 298
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 534 ACCISCC*S*WRNNRKHI-PGLLTYHMGSLRWTKNTRN 644
ACC + C S W N+ +++ P +L M + RW ++R+
Sbjct: 169 ACCSTSCPSYWWNSEEYLGPAVL---MQAYRWIIDSRD 203
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 432 KDYIVTGGLDNLVKVWSYE 488
+D +TG D L+K+W+ E
Sbjct: 148 EDIFITGSADKLIKIWNGE 166
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 673 IVFSPDGSQVATGGHTGKVTVYGISM-ELWIKC 768
+ +SPDG +A GG V++Y + +L +C
Sbjct: 370 VTWSPDGKFIAIGGKDDLVSIYSFPLRKLVARC 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,218
Number of Sequences: 5004
Number of extensions: 67261
Number of successful extensions: 288
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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