Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B17
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 661 DMWKIVFSPDGSQVATGGHTGKVTVYGISMELW--IKC*-IRXESYYVCCLXP 810
           D+  +  + D +Q+  G     +T Y IS+E W  IK   +R E++Y+CC  P
Sbjct: 174 DLRHLAQTEDSNQIEVGID---LTDYYISVE-WDIIKVPAVRNEAFYICCEEP 222


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 763 LSTVPLIFHTQSPFQCDLQWLLGYHQVRTQSSTY 662
           L  +P I   + P +  L+W++    V   +STY
Sbjct: 339 LKYLPTILMMRRPKKTRLRWMMEIPNVTLPTSTY 372


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 293 SYLNISKNAVKYN 331
           +YL I K+AVK+N
Sbjct: 172 TYLRIKKHAVKFN 184


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 775 RXESYYVCCLXP 810
           R E YY CC  P
Sbjct: 224 RNEEYYPCCTEP 235


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 268 LSATNKIR*FTQRIYTFNIFI 206
           L+ TN+IR F   I+TF+  I
Sbjct: 202 LTDTNEIRIFVATIFTFSYCI 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,183
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)