Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_B16
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    83   5e-17
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.90 
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   1.2  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   8.4  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   8.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   8.4  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 30/86 (34%), Positives = 57/86 (66%)
 Frame = +2

Query: 518 FRDAVVDWARDHRMHHKYSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDL 697
           F  ++  W+RDHR HH+Y++TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL
Sbjct: 136 FEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDL 192

Query: 698 HNDPILRFQKKYYQILMPLACFIMPT 775
           ++DP + F  +++  +     FI P+
Sbjct: 193 NSDPFVMFNHRHFLPIASFMAFIFPS 218



 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
 Frame = +1

Query: 250 PHVPPSAEKRPWKIV-------WRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYL 408
           P  P   +++PW +        W + +L F L +  +YG  +F      +T IFAI  Y 
Sbjct: 42  PKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYA 99

Query: 409 CSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQG 525
            SGLGITAG HRLW+H++YKA+ PL   L      AF+G
Sbjct: 100 YSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEG 138


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 252  PCTSLSREETMEDCVEKRDSVLYSACRWC 338
            PC ++S+  T  +   K+ S+L+  CR C
Sbjct: 1407 PCATISKAVTQHNAYNKKLSLLFDICRGC 1435


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 719 FQKKYYQILM-PLACFIMPTYVXHCGEKQFGT 811
           F+ ++Y++ + P+A FIM  Y+   G K+ G+
Sbjct: 351 FEGRFYRLCVHPIANFIMQRYIRRLGRKEIGS 382


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 327 CRWCLWRIPVPFQSHVEDFYIRH 395
           CR CL  I  P +S +E++ ++H
Sbjct: 105 CRVCLTNIGQPERSRIENYVLKH 127


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 409 TSTKIWRI*KSSTWL*KGTGILHKHHRHA 323
           T+T +WR    ++ L    G+  KH +HA
Sbjct: 18  TTTSLWRRGPDNSLLCNACGLYQKHRKHA 46


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 330 RWCLWRIPVPFQSHVEDFY 386
           RWCL   P+  Q+H+++FY
Sbjct: 421 RWCLSGTPI--QNHIDEFY 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,161,694
Number of Sequences: 5004
Number of extensions: 97306
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)